exportResultsToCSV

exportResultsToCSV exports all results to a CSV file

exportResultsToCSV(
  connectionDetails,
  resultsDatabaseSchema,
  analysisIds = c(),
  minCellCount = 5,
  exportFolder
)

Arguments

connectionDetails

An R object of type connectionDetails created using the function createConnectionDetails in the DatabaseConnector package.

resultsDatabaseSchema

Fully qualified name of database schema that we can write final results to. Default is cdmDatabaseSchema. On SQL Server, this should specifiy both the database and the schema, so for example, on SQL Server, 'cdm_results.dbo'.

analysisIds

(OPTIONAL) A vector containing the set of Achilles analysisIds for which results will be generated. If not specified, all analyses will be executed. Use getAnalysisDetails to get a list of all Achilles analyses and their Ids.

minCellCount

To avoid patient identification, cells with small counts (<= minCellCount) are deleted. Set to 0 for complete summary without small cell count restrictions.

exportFolder

Path to store results

Value

No return value. Called to export CSV file to the file system.

Details

exportResultsToCSV writes a CSV file with all results to the export folder.