Create a fastBAR Cyclops prior object
createFastBarPrior.RdcreateFastBarPrior creates a fastBAR Cyclops prior object for use with fitCyclopsModel.
createFastBarPrior(
penalty = 0,
exclude = c(),
forceIntercept = FALSE,
fitBestSubset = FALSE,
initialRidgeVariance = 10000,
tolerance = 1e-08,
maxIterations = 10000,
threshold = 1e-06
)Arguments
- penalty
Specifies the BAR penalty
- exclude
A vector of numbers or covariateId names to exclude from prior
- forceIntercept
Logical: Force intercept coefficient into regularization
- fitBestSubset
Logical: Fit final subset with no regularization
- initialRidgeVariance
Numeric: variance used for algorithm initiation
- tolerance
Numeric: maximum abs change in coefficient estimates from successive iterations to achieve convergence
- maxIterations
Numeric: maximum iterations to achieve convergence
- threshold
Numeric: absolute threshold at which to force coefficient to 0
Value
A BAR Cyclops prior object of class inheriting from
"cyclopsPrior" for use with fitCyclopsModel.