Create HDPS covariate settings
createHdpsCovariateSettings(useCovariateCohortIdIs1 = FALSE, useCovariateDemographics = TRUE, useCovariateDemographicsGender = TRUE, useCovariateDemographicsRace = TRUE, useCovariateDemographicsEthnicity = TRUE, useCovariateDemographicsAge = TRUE, useCovariateDemographicsYear = TRUE, useCovariateDemographicsMonth = TRUE, useCovariateConditionOccurrence = TRUE, useCovariate3DigitIcd9Inpatient180d = FALSE, useCovariate3DigitIcd9Inpatient180dMedF = FALSE, useCovariate3DigitIcd9Inpatient180d75F = FALSE, useCovariate3DigitIcd9Ambulatory180d = FALSE, useCovariate3DigitIcd9Ambulatory180dMedF = FALSE, useCovariate3DigitIcd9Ambulatory180d75F = FALSE, useCovariateDrugExposure = FALSE, useCovariateIngredientExposure180d = FALSE, useCovariateIngredientExposure180dMedF = FALSE, useCovariateIngredientExposure180d75F = FALSE, useCovariateProcedureOccurrence = FALSE, useCovariateProcedureOccurrenceInpatient180d = FALSE, useCovariateProcedureOccurrenceInpatient180dMedF = FALSE, useCovariateProcedureOccurrenceInpatient180d75F = FALSE, useCovariateProcedureOccurrenceAmbulatory180d = FALSE, useCovariateProcedureOccurrenceAmbulatory180dMedF = FALSE, useCovariateProcedureOccurrenceAmbulatory180d75F = FALSE, excludedCovariateConceptIds = c(), includedCovariateConceptIds = c(), deleteCovariatesSmallCount = 100)
useCovariateCohortIdIs1 | A boolean value (TRUE/FALSE) to determine if a covariate should be contructed for whether the cohort ID is 1 (currently primarily used in CohortMethod). |
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useCovariateDemographics | A boolean value (TRUE/FALSE) to determine if demographic covariates (age in 5-yr increments, gender, race, ethnicity, year of index date, month of index date) will be created and included in future models. |
useCovariateDemographicsGender | A boolean value (TRUE/FALSE) to determine if gender should be included in the model. |
useCovariateDemographicsRace | A boolean value (TRUE/FALSE) to determine if race should be included in the model. |
useCovariateDemographicsEthnicity | A boolean value (TRUE/FALSE) to determine if ethnicity should be included in the model. |
useCovariateDemographicsAge | A boolean value (TRUE/FALSE) to determine if age (in 5 year increments) should be included in the model. |
useCovariateDemographicsYear | A boolean value (TRUE/FALSE) to determine if calendar year should be included in the model. |
useCovariateDemographicsMonth | A boolean value (TRUE/FALSE) to determine if calendar month should be included in the model. |
useCovariateConditionOccurrence | A boolean value (TRUE/FALSE) to determine if covariates derived from CONDITION_OCCURRENCE table will be created and included in future models. |
useCovariate3DigitIcd9Inpatient180d | A boolean value (TRUE/FALSE) to determine if covariates will be created and used in models that look for presence/absence of condition within inpatient setting in 180d window prior to or on cohort index date. Conditions are aggregated at the ICD-9 3-digit level. Only applicable if useCovariateConditionOccurrence = TRUE. |
useCovariate3DigitIcd9Inpatient180dMedF | Similar to
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useCovariate3DigitIcd9Inpatient180d75F | Similar to
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useCovariate3DigitIcd9Ambulatory180d | A boolean value (TRUE/FALSE) to determine if covariates will be created and used in models that look for presence/absence of condition within ambulatory setting in 180d window prior to or on cohort index date. Conditions are aggregated at the ICD-9 3-digit level. Only applicable if useCovariateConditionOccurrence = TRUE. |
useCovariate3DigitIcd9Ambulatory180dMedF | Similar to
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useCovariate3DigitIcd9Ambulatory180d75F | Similar to
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useCovariateDrugExposure | A boolean value (TRUE/FALSE) to determine if covariates derived from DRUG_EXPOSURE table will be created and included in future models. |
useCovariateIngredientExposure180d | A boolean value (TRUE/FALSE) to determine if covariates will be created and used in models that look for presence/absence of drug ingredients within inpatient setting in 180d window prior to or on cohort index date. Only applicable if useCovariateDrugExposure = TRUE. |
useCovariateIngredientExposure180dMedF | Similar to
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useCovariateIngredientExposure180d75F | Similar to
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useCovariateProcedureOccurrence | A boolean value (TRUE/FALSE) to determine if covariates derived from PROCEDURE_OCCURRENCE table will be created and included in future models. |
useCovariateProcedureOccurrenceInpatient180d | A boolean value (TRUE/FALSE) to determine if covariates will be created and used in models that look for presence/absence of procedures within inpatient setting in 180d window prior to or on cohort index date. Only applicable if useCovariateProcedureOccurrence = TRUE. |
useCovariateProcedureOccurrenceInpatient180dMedF | Similar to
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useCovariateProcedureOccurrenceInpatient180d75F | Similar to
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useCovariateProcedureOccurrenceAmbulatory180d | A boolean value (TRUE/FALSE) to determine if covariates will be created and used in models that look for presence/absence of procedures within ambulatory setting in 180d window prior to or on cohort index date. Only applicable if useCovariateProcedureOccurrence = TRUE. |
useCovariateProcedureOccurrenceAmbulatory180dMedF | Similar to
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useCovariateProcedureOccurrenceAmbulatory180d75F | Similar to
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excludedCovariateConceptIds | A list of concept IDs that should NOT be used to construct covariates. |
includedCovariateConceptIds | A list of concept IDs that should be used to construct covariates. |
deleteCovariatesSmallCount | A numeric value used to remove covariates that occur in both cohorts fewer than deleteCovariateSmallCounts time. |
An object of type hdpsCovariateSettings
, to be used in other functions.
creates an object specifying how covariates should be contructed from data in the CDM model.