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Format a measurement_timings object into a visual table

tableMeasurementValueAsConcept.Rd

Format a measurement_timings object into a visual table

Usage

tableMeasurementValueAsConcept(
  result,
  type = "gt",
  header = c(visOmopResults::strataColumns(result)),
  groupColumn = c("codelist_name"),
  settingsColumn = character(),
  hide = character(),
  style = "default",
  .options = list()
)

Arguments

result

A summarised_result object.

type

Type of table. Check supported types with `visOmopResults::tableType()`.

header

Columns to use as header. See options with `visOmopResults::tableColumns(result)`.

groupColumn

Columns to group by. See options with `visOmopResults::tableColumns(result)`.

settingsColumn

Columns from settings to include in results. See options with `visOmopResults::settingsColumns(result)`.

hide

Columns to hide from the visualisation. See options with `visOmopResults::tableColumns(result)`.

style

Named list that specifies how to style the different parts of the table generated. It can either be a pre-defined style ("default" or "darwin" - the latter just for gt and flextable), NULL to get the table type default style, or custom. Keep in mind that styling code is different for all table styles. To see the different styles use visOmopResults::tableStyle().

.options

A named list with additional formatting options. `visOmopResults::tableOptions()` shows allowed arguments and their default values.

Value

A formatted table

Examples

# \donttest{
library(MeasurementDiagnostics)
cdm <- mockMeasurementDiagnostics()
result <- summariseMeasurementUse(
              cdm = cdm,
              codes = list("test_codelist" = c(3001467L, 45875977L)))
#> → Getting measurement records based on 2 concepts.
#> → Subsetting records to the subjects and timing of interest.
#> → Getting time between records per person.
#> → Summarising results - value as number.
#> → Summarising results - value as concept.
#> → Binding all diagnostic results.
tableMeasurementValueAsConcept(result)



  
CDM name
      Concept name
      Concept ID
      Domain ID
      Variable name
      Value as concept name
      Value as concept ID
      Estimate name
      Estimate value
    
test_codelist
    
mock database
overall
overall
overall
Value as concept name
Low
4267416
N (%)
34 (34.00%)





High
4328749
N (%)
33 (33.00%)





-
-
N (%)
33 (33.00%)

Alkaline phosphatase.bone [Enzymatic activity/volume] in Serum or Plasma
3001467
Measurement
Value as concept name
Low
4267416
N (%)
34 (34.00%)





High
4328749
N (%)
33 (33.00%)





-
-
N (%)
33 (33.00%)
CDMConnector::cdmDisconnect(cdm = cdm)
# }