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Format a measurement_timings object into a visual table

tableMeasurementValueAsNumeric.Rd

Format a measurement_timings object into a visual table

Usage

tableMeasurementValueAsNumeric(
  result,
  type = "gt",
  header = c(visOmopResults::strataColumns(result)),
  groupColumn = c("codelist_name"),
  settingsColumn = character(),
  hide = c("variable_name", "variable_level"),
  style = NULL,
  .options = list()
)

Arguments

result

A summarised_result object.

type

Type of table. Check supported types with `visOmopResults::tableType()`.

header

Columns to use as header. See options with `visOmopResults::tableColumns(result)`.

groupColumn

Columns to group by. See options with `visOmopResults::tableColumns(result)`.

settingsColumn

Columns from settings to include in results. See options with `visOmopResults::settingsColumns(result)`.

hide

Columns to hide from the visualisation. See options with `visOmopResults::tableColumns(result)`.

style

Named list that specifies how to style the different parts of the table generated. It can either be a pre-defined style ("default" or "darwin" - the latter just for gt and flextable), or NULL which converts to "default" style, or custom code.

.options

A named list with additional formatting options. `visOmopResults::tableOptions()` shows allowed arguments and their default values.

Value

A formatted table

Examples

# \donttest{
library(MeasurementDiagnostics)
cdm <- mockMeasurementDiagnostics()
#> Warning: ! 2 casted column in measurement as do not match expected column type:
#> • `value_as_concept_id` from numeric to integer
#> • `unit_concept_id` from numeric to integer
result <- summariseMeasurementUse(
              cdm = cdm,
              codes = list("test_codelist" = c(3001467L, 45875977L)))
#> → Getting measurement records based on 2 concepts.
#> → Subsetting records to the subjects and timing of interest.
#> → Getting time between records per person.
#> → Summarising results - value as number.
#> → Summarising results - value as concept.
#> → Binding all diagnostic results.
tableMeasurementValueAsNumeric(result)



  
CDM name
      Concept name
      Concept ID
      Domain ID
      Unit concept name
      Unit concept ID
      Estimate name
      Estimate value
    
test_codelist
    
mock database
overall
overall
overall
kilogram
9529
N
50






Median [Q25 - Q75]
8.77 [7.07 - 10.48]






Q05 - Q95
5.70 - 11.84






Q01 - Q99
5.43 -  12.11






Range
5.36 to 12.18






Missing value, N (%)
2 (4.00%)




-
-
N
50






Median [Q25 - Q75]
8.77 [7.10 - 10.44]






Q05 - Q95
5.77 - 11.77






Q01 - Q99
5.50 -  12.04






Range
5.44 to 12.11






Missing value, N (%)
3 (6.00%)

Alkaline phosphatase.bone [Enzymatic activity/volume] in Serum or Plasma
3001467
Measurement
kilogram
9529
N
50






Median [Q25 - Q75]
8.77 [7.07 - 10.48]






Q05 - Q95
5.70 - 11.84






Q01 - Q99
5.43 -  12.11






Range
5.36 to 12.18






Missing value, N (%)
2 (4.00%)




-
-
N
50






Median [Q25 - Q75]
8.77 [7.10 - 10.44]






Q05 - Q95
5.77 - 11.77






Q01 - Q99
5.50 -  12.04






Range
5.44 to 12.11






Missing value, N (%)
3 (6.00%)
CDMConnector::cdmDisconnect(cdm = cdm)
# }