Normalize Legacy Concept Set Manifest File Paths

The concept-set counterpart of normalizeCohortManifestPaths(). Rewrites the file_path of every active row in conceptSetManifest.sqlite so it is stored relative to the study repository root. Only file_path changes — hashes, status and timestamps are untouched, so this never registers as a definition change.

Usage

normalizeConceptSetManifestPaths(
  conceptSetsFolderPath = here::here("inputs/conceptSets"),
  dryRun = FALSE
)

Arguments

conceptSetsFolderPath

Character. Path to the conceptSets folder (or anywhere inside the study repository). Defaults to here::here("inputs/conceptSets").

dryRun

Logical. When TRUE, report what would change without writing. Defaults to FALSE.

Value

Invisibly, a tibble with columns id, old_path, new_path, status (one of "rewritten", "would_rewrite", "unchanged", "broken", "no_path").

See also

findStudyProjectRoot(), loadConceptSetManifest()