Create a local cdm_reference from a dataset.

Create a local cdm_reference from a dataset.

Usage

mockCdmFromDataset(
  datasetName = "GiBleed",
  source = "local",
  cdmVersion = NULL
)

Arguments

datasetName

Name of the mock dataset. See availableMockDatasets() for possibilities.

source

Choice between local or duckdb.

cdmVersion

Version of the OMOP CDM, can either be '5.3' or '5.4'. By default if not specified in databaseName the cdmVersion will be '5.4'.

Value

A local cdm_reference object.

Examples

library(omock)

mockDatasetsFolder(tempdir())
#> Warning: `mockDatasetsFolder()` was deprecated in omock 0.6.0.
#> ℹ Please use `omopDataFolder()` instead.
#> [1] "/tmp/Rtmp7IS9Tx/mockDatasets"
downloadMockDataset(datasetName = "GiBleed")
#> ℹ Attempting download with timeout = 120 seconds.
cdm <- mockCdmFromDataset(datasetName = "GiBleed")
#> ℹ Loading bundled GiBleed tables from package data.
#> ℹ Adding drug_strength table.
#> ℹ Creating local <cdm_reference> object.
cdm
#> 
#> ── # OMOP CDM reference (local) of GiBleed ─────────────────────────────────────
#> • omop tables: care_site, cdm_source, concept, concept_ancestor, concept_class,
#> concept_relationship, concept_synonym, condition_era, condition_occurrence,
#> cost, death, device_exposure, domain, dose_era, drug_era, drug_exposure,
#> drug_strength, fact_relationship, location, measurement, metadata, note,
#> note_nlp, observation, observation_period, payer_plan_period, person,
#> procedure_occurrence, provider, relationship, source_to_concept_map, specimen,
#> visit_detail, visit_occurrence, vocabulary
#> • cohort tables: -
#> • achilles tables: -
#> • other tables: -