Extracts covariates based on cohorts

Extracts covariates based on cohorts

getCohortCovariateData(
  connection,
  oracleTempSchema = NULL,
  cdmDatabaseSchema,
  cdmVersion = "5",
  cohortTable = "#cohort_person",
  rowIdField = "row_id",
  aggregated,
  cohortIds,
  covariateSettings,
  ...
)

Arguments

connection

The database connection

oracleTempSchema

The temp schema if using oracle

cdmDatabaseSchema

The schema of the OMOP CDM data

cdmVersion

version of the OMOP CDM data

cohortTable

the table name that contains the target population cohort

rowIdField

string representing the unique identifier in the target population cohort

aggregated

whether the covariate should be aggregated

cohortIds

cohort id for the target cohort

covariateSettings

settings for the covariate cohorts and time periods

...

additional arguments from FeatureExtraction

Value

The models will now be in the package

Details

The user specifies a cohort and time period and then a covariate is constructed whether they are in the cohort during the time periods relative to target population cohort index