All functions |
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Function to create age attribute |
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Coerce a concept set expression to a dataframe |
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Coerce Capr object to json |
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Function to enumerate an minimal count of occurrences |
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Function to enumerate a maximum count of occurrences |
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Add male attribute to a query |
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Create a cohort attrition object |
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Between operator |
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An S4 class identifying a censoring criteria for the cohort |
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Constructor for a set of censoring events |
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Function that creates a cohort object |
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Compile a Capr cohort to json |
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Compile a Capr object to json |
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An S4 class for a single OMOP Concept |
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An S4 class for a concept attribute |
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An S4 class for ConceptSetExpresion |
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An S4 class for ConceptSetItem |
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Query the condition era domain |
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Query the condition domain |
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Add a condition type attribute to determine the provenance of the record |
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A function to construct the observationWindow |
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An S4 for a criteria |
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Create a concept set |
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Function to create age attribute |
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An S4 class for a date adjustment attribute |
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Function to create days supply attribute |
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Query the condition era domain |
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Query the drug domain |
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Query the drug era domain |
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Function to create an exit based on exit based on the end of a continuous drug exposure |
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Query the drug domain |
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An S4 class for a cohort exit based on continuous exposure persistence. |
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Function to create quantity attribute |
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Function to create refills attribute |
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Add a drug type attribute to determine the provenance of the record |
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Function that creates an eventAperture an opening where an event can occur relative to the index event |
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Function that creates a end date attribute |
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An S4 class for an Endpoint |
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Create a cohort entry criteria |
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Equal to operator |
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FUnction checks if two concept set class objects are equivalent |
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Create a Cohort Era class object |
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An S4 class for Aperture |
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Function creates an event window where the event ends |
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Function creates an event window where the event starts |
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An S4 class for a Window |
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Function to enumerate an exact count of occurrences |
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Function that creates a cohort exit object |
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Add first occurrence attribute |
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An S4 class for a cohort exit based on fixed duration persistence. |
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Function to create an exit based on exit based on the end of a continuous drug exposure |
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Create the Capr code to build a concept set |
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Fill in Concept Set details using a vocab |
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An S4 class for a group |
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Greater than operator |
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Greater than or equal to operator |
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An S4 class for a logical attribute |
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Less than operator |
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Less than or equal to operator |
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Make a cohort dataframe for cohort generator |
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Query the measurement domain |
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Add a measurement type attribute to determine the provenance of the record |
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Not between operator |
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An S4 class for a nested attribute |
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Construct a nested group where all criteria and groups must be satisfied |
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Function to construct a nested group where any criteria and groups may be satisfied |
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Function to construct a nested group where at least some of the criteria or groups must be satisfied |
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Function to construct a nested group where at most some of the criteria or groups must be satisfied |
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Query the observation domain |
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An S4 class for a cohort exit based on end of continuous observation. |
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Function to create an exit based on continuous observation |
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Add a observation type attribute to determine the provenance of the record |
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An S4 class for an ObservationWindow |
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An S4 class for an occurrence. |
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An S4 class for a op attribute that is a date |
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An S4 class for a op attribute that is an integer |
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An S4 class for a op attribute that is a numeric |
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An S4 super class for other opAttribute objects to inherit. |
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Query the procedure domain |
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Add a procedure type attribute to determine the provenance of the record |
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An S4 class for a Circe Query |
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Function to create rangeHigh attribute |
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Function to create rangeLow attribute |
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Read a concept set json or csv into R |
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Function that creates a start date attribute |
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Function to coerce cohort to circe |
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Add unit attribute to a query |
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Function to create valueAsNumber attribute |
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Query the visit occurrence domain |
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Add a visit type attribute to determine the provenance of the record |
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Function to construct a group where all criteria and groups must be satisfied |
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Function to construct a group where any criteria and groups may be satisfied |
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Function to construct a group where at least some of the criteria or groups must be satisfied |
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Function to construct a group where at most some of the criteria or groups must be satisfied |
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Write Cohort json file |
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Save a concept set as a json file |