Compute fine the subjects that fail the dechallenge rechallenge study
Source:R/DechallengeRechallenge.R
computeRechallengeFailCaseSeriesAnalyses.RdCompute fine the subjects that fail the dechallenge rechallenge study
Usage
computeRechallengeFailCaseSeriesAnalyses(
connectionDetails = NULL,
targetDatabaseSchema,
targetTable,
outcomeDatabaseSchema = targetDatabaseSchema,
outcomeTable = targetTable,
tempEmulationSchema = getOption("sqlRenderTempEmulationSchema"),
settings,
databaseId = "database 1",
showSubjectId = FALSE,
outputFolder,
minCellCount = 0,
...
)Arguments
- connectionDetails
An object of type `connectionDetails` as created using the [DatabaseConnector::createConnectionDetails()] function.
- targetDatabaseSchema
Schema name where your target cohort table resides. Note that for SQL Server, this should include both the database and schema name, for example 'scratch.dbo'.
- targetTable
Name of the target cohort table.
- outcomeDatabaseSchema
Schema name where your outcome cohort table resides. Note that for SQL Server, this should include both the database and schema name, for example 'scratch.dbo'.
- outcomeTable
Name of the outcome cohort table.
- tempEmulationSchema
Some database platforms like Oracle and Impala do not truly support temp tables. To emulate temp tables, provide a schema with write privileges where temp tables can be created
- settings
The settings for the timeToEvent study
- databaseId
An identifier for the database (string)
- showSubjectId
if F then subject_ids are hidden (recommended if sharing results)
- outputFolder
A directory to save the results as csv files
- minCellCount
The minimum cell value to display, values less than this will be replaced by -1
- ...
extra inputs
Value
An Andromeda::andromeda() object with the case series details of the failed rechallenge
See also
Other DechallengeRechallenge:
computeDechallengeRechallengeAnalyses(),
createDechallengeRechallengeSettings()
Examples
conDet <- exampleOmopConnectionDetails()
drSet <- createDechallengeRechallengeSettings(
targetIds = c(1,2),
outcomeIds = 3
)
computeRechallengeFailCaseSeriesAnalyses(
connectionDetails = conDet,
targetDatabaseSchema = 'main',
targetTable = 'cohort',
settings = drSet,
outputFolder = tempdir()
)
#> Inputs checked
#> Connecting using SQLite driver
#> Computing dechallenge rechallenge fails results
#> | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100%
#> Executing SQL took 0.0149 secs
#> Computing dechallenge failed case series for 2 target IDs and 1 outcome IDs took 0.123 secs
#> exporting to csv file
#> Writing 0 rows to csv