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Create during covariate settings

Source: R/CustomCovariates.R
createDuringCovariateSettings.Rd

Create during covariate settings

Usage

createDuringCovariateSettings(
  useConditionOccurrenceDuring = FALSE,
  useConditionOccurrencePrimaryInpatientDuring = FALSE,
  useConditionEraDuring = FALSE,
  useConditionGroupEraDuring = FALSE,
  useDrugExposureDuring = FALSE,
  useDrugEraDuring = FALSE,
  useDrugGroupEraDuring = FALSE,
  useProcedureOccurrenceDuring = FALSE,
  useDeviceExposureDuring = FALSE,
  useMeasurementDuring = FALSE,
  useObservationDuring = FALSE,
  useVisitCountDuring = FALSE,
  useVisitConceptCountDuring = FALSE,
  includedCovariateConceptIds = c(),
  addDescendantsToInclude = FALSE,
  excludedCovariateConceptIds = c(),
  addDescendantsToExclude = FALSE,
  includedCovariateIds = c()
)

Arguments

useConditionOccurrenceDuring

One covariate per condition in the condition_occurrence table starting between cohort start and cohort end. (analysis ID 109)

useConditionOccurrencePrimaryInpatientDuring

One covariate per condition observed as a primary diagnosis in an inpatient setting in the condition_occurrence table starting between cohort start and cohort end. (analysis ID 110)

useConditionEraDuring

One covariate per condition in the condition_era table starting between cohort start and cohort end. (analysis ID 217)

useConditionGroupEraDuring

One covariate per condition era rolled up to groups in the condition_era table starting between cohort start and cohort end. (analysis ID 218)

useDrugExposureDuring

One covariate per drug in the drug_exposure table between cohort start and end. (analysisId 305)

useDrugEraDuring

One covariate per drug in the drug_era table between cohort start and end. (analysis ID 417)

useDrugGroupEraDuring

One covariate per drug rolled up to ATC groups in the drug_era table between cohort start and end. (analysis ID 418)

useProcedureOccurrenceDuring

One covariate per procedure in the procedure_occurrence table between cohort start and end. (analysis ID 505)

useDeviceExposureDuring

One covariate per device in the device exposure table starting between cohort start and end. (analysis ID 605)

useMeasurementDuring

One covariate per measurement in the measurement table between cohort start and end. (analysis ID 713)

useObservationDuring

One covariate per observation in the observation table between cohort start and end. (analysis ID 805)

useVisitCountDuring

The number of visits observed between cohort start and end. (analysis ID 926)

useVisitConceptCountDuring

The number of visits observed between cohort start and end, stratified by visit concept ID. (analysis ID 927)

includedCovariateConceptIds

A list of concept IDs that should be used to construct covariates.

addDescendantsToInclude

Should descendant concept IDs be added to the list of concepts to include?

excludedCovariateConceptIds

A list of concept IDs that should NOT be used to construct covariates.

addDescendantsToExclude

Should descendant concept IDs be added to the list of concepts to exclude?

includedCovariateIds

A list of covariate IDs that should be restricted to.

Value

An object of type covariateSettings, to be used in other functions.

Details

creates an object specifying how during covariates should be constructed from data in the CDM model.

See also

Other CovariateSetting: getDbDuringCovariateData()

Examples

settings <- createDuringCovariateSettings(
  useConditionOccurrenceDuring = TRUE,
  useConditionOccurrencePrimaryInpatientDuring = FALSE,
  useConditionEraDuring = FALSE,
  useConditionGroupEraDuring = FALSE
)