A utility designed for creating a published zip of a shiny app with an sqlite database. Designed for sharing projects on servers like data.ohdsi.org.
Takes the shiny code from the R project and adds an sqlite file to a zip archive. Uncompressed cohort diagnostics sqlite databases can become large very quickly.
createDiagnosticsExplorerZip(
outputZipfile = file.path(getwd(), "DiagnosticsExplorer.zip"),
sqliteDbPath = "MergedCohortDiagnosticsData.sqlite",
shinyDirectory = system.file(file.path("shiny", "DiagnosticsExplorer"), package =
"CohortDiagnostics"),
overwrite = FALSE
)Arguments
- outputZipfile
The output path for the zip file
- sqliteDbPath
Merged Cohort Diagnostics sqlitedb created with
createMergedResultsFile- shinyDirectory
(optional) Path to the location where the shiny code is stored. By default, this is the package root
- overwrite
If the zip file already exists, overwrite it?