Cyclops v3.0.0 2020-06-05

Changes:

  1. switch to Andromeda from ff to hold large datasets. This change breaks API

Cyclops v2.0.4 Unreleased

Changes:

  1. removed, unused variable imputation functions that contained a std::exit

Cyclops v2.0.3 2020-04-11

Changes:

  1. fix computation under conditional Poisson models by reverting to v1.3.4-style loop
  2. fix several unit-tests for compatibility with R 4.0 factors
  3. add ability to profile likelihood function in parallel
  4. add initial infrastructure for competing risks models

Cyclops v2.0.2 2019-03-17

Changes:

  1. use RNGversion("3.5.0") in unit-tests to reproduce old RNG behavior
  2. fix prior-type checks when specifying multiple types

Cyclops 2.0.1 2018-09-23

Changes:

  1. patch two memory leaks in ModelData.cpp and ModelSpecifics.hpp

Cyclops 2.0.0 2018-09-18

Changes:

  1. simplify internal transformation-reductions loops
  2. implemented non-negative weights
  3. allow for run-time selection of 32-/64-bit reals
  4. remove dependence on GNUmake
  5. temporarily remove dependence on RcppParallel (until TBB is again R-compliant)

Cyclops 1.3.4 2018-06-15

Changes:

  1. fix undeclared dependencies in unit-tests: MASS and microbenchmarks
  2. fix issues with ATLAS compilation
  3. add contexts to testthat files
  4. fix ASAN errors in AbstractModelSpecifics

Cyclops 1.3.3 Unreleased

Changes:

  1. fix testthat expected error message

Cyclops 1.3.2 2018-05-04

Changes:

  1. explicitly includes <complex> header, needed for R 3.5 builds
  2. remove pragma statements used to quiet RcppEigen and RcppParallel

Cyclops 1.3.1 Unreleased

Changes:

  1. fixes covariate indices returned from .checkCovariates when excluding covariates from regularization

Cyclops 1.3.0 2017-08-23

Changes:

  1. implements specialized priors through callbacks for use, for example, in the BrokenAdaptiveRidge package to provide L0-based model selection
  2. implements specialized control through callbacks for use, for example, auto-and-grid-based cross-validation hyperparameter searches
  3. removes src/boost that clashes with BH 1.65.0

Cyclops 1.2.3 Unreleased

Changes:

  1. fixed predict error with ff.data.frame with size == 0

Cyclops 1.2.2 2016-10-06

Changes:

  1. fixed solaris build errors
  2. added compatibility for C++14 (make_unique)
  3. fixed multiple ASan warnings

Cyclops 1.2.0 2016-08-01

Changes: initial submission to CRAN