logLik returns the current log-likelihood of the fit in a Cyclops model fit object
# S3 method for cyclopsFit
logLik(object, ...)A Cyclops model fit object
Additional arguments
#Generate some simulated data:
sim <- simulateCyclopsData(nstrata = 1, nrows = 1000, ncovars = 2, eCovarsPerRow = 0.5,
model = "poisson")
#> Sparseness = 75.25 %
cyclopsData <- convertToCyclopsData(sim$outcomes, sim$covariates, modelType = "pr",
addIntercept = TRUE)
#> Sorting covariates by covariateId and rowId
#Define the prior and control objects to use cross-validation for finding the
#optimal hyperparameter:
prior <- createPrior("laplace", exclude = 0, useCrossValidation = TRUE)
control <- createControl(cvType = "auto", noiseLevel = "quiet")
#Fit the model
fit <- fitCyclopsModel(cyclopsData,prior = prior, control = control)
#> Using cross-validation selector type byRow
#> Performing 10-fold cross-validation [seed = 1698789252] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100
#> Using 1 thread(s)
#> Starting var = 0.2475 (default)
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #1 Rep #1 pred log like = 764.157
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #2 Rep #1 pred log like = 802.169
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #3 Rep #1 pred log like = 809.884
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #4 Rep #1 pred log like = 829.664
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #5 Rep #1 pred log like = 803.191
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #6 Rep #1 pred log like = 774.997
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #7 Rep #1 pred log like = 771.955
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #8 Rep #1 pred log like = 809.568
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #9 Rep #1 pred log like = 730.503
#> Running at Laplace(2.84268) None Grid-point #1 at 0.2475 Fold #10 Rep #1 pred log like = 661.936
#> AvgPred = 775.802 with stdev = 46.7085
#> Completed at 0.2475
#> Next point at 2.475 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#>
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #1 Rep #1 pred log like = 764.135
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #2 Rep #1 pred log like = 802.181
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #3 Rep #1 pred log like = 809.903
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #4 Rep #1 pred log like = 829.66
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #5 Rep #1 pred log like = 803.233
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #6 Rep #1 pred log like = 774.984
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #7 Rep #1 pred log like = 771.951
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #8 Rep #1 pred log like = 809.56
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #9 Rep #1 pred log like = 730.492
#> Running at Laplace(0.898933) None Grid-point #2 at 2.475 Fold #10 Rep #1 pred log like = 661.932
#> AvgPred = 775.803 with stdev = 46.7144
#> Completed at 2.475
#> Next point at 24.75 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#>
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #1 Rep #1 pred log like = 764.128
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #2 Rep #1 pred log like = 802.185
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #3 Rep #1 pred log like = 809.909
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #4 Rep #1 pred log like = 829.658
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #5 Rep #1 pred log like = 803.246
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #6 Rep #1 pred log like = 774.98
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #7 Rep #1 pred log like = 771.949
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #8 Rep #1 pred log like = 809.558
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #9 Rep #1 pred log like = 730.488
#> Running at Laplace(0.284268) None Grid-point #3 at 24.75 Fold #10 Rep #1 pred log like = 661.931
#> AvgPred = 775.803 with stdev = 46.7163
#> Completed at 24.75
#> Next point at 247.5 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#>
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #1 Rep #1 pred log like = 764.126
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #3 Rep #1 pred log like = 809.91
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #4 Rep #1 pred log like = 829.658
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #5 Rep #1 pred log like = 803.25
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #6 Rep #1 pred log like = 774.979
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #7 Rep #1 pred log like = 771.949
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #8 Rep #1 pred log like = 809.557
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.0898933) None Grid-point #4 at 247.5 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7169
#> Completed at 247.5
#> Next point at 2475 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#>
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #5 Rep #1 pred log like = 803.251
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.0284268) None Grid-point #5 at 2475 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7171
#> Completed at 2475
#> Next point at 24750 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#>
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #5 Rep #1 pred log like = 803.251
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.00898933) None Grid-point #6 at 24750 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7171
#> Completed at 24750
#> Next point at 247500 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#>
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #5 Rep #1 pred log like = 803.251
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.00284268) None Grid-point #7 at 247500 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7171
#> Completed at 247500
#> Next point at 2.475e+06 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#>
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.000898933) None Grid-point #8 at 2.475e+06 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+06
#> Next point at 2.475e+07 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#>
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(0.000284268) None Grid-point #9 at 2.475e+07 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+07
#> Next point at 2.475e+08 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-05) None Grid-point #10 at 2.475e+08 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+08
#> Next point at 2.475e+09 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-05) None Grid-point #11 at 2.475e+09 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+09
#> Next point at 2.475e+10 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-06) None Grid-point #12 at 2.475e+10 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+10
#> Next point at 2.475e+11 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-06) None Grid-point #13 at 2.475e+11 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+11
#> Next point at 2.475e+12 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-07) None Grid-point #14 at 2.475e+12 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+12
#> Next point at 2.475e+13 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-07) None Grid-point #15 at 2.475e+13 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+13
#> Next point at 2.475e+14 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-08) None Grid-point #16 at 2.475e+14 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+14
#> Next point at 2.475e+15 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-08) None Grid-point #17 at 2.475e+15 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+15
#> Next point at 2.475e+16 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#> search[ 2.475e+15 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-09) None Grid-point #18 at 2.475e+16 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+16
#> Next point at 2.475e+17 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#> search[ 2.475e+15 ] = 775.803(46.7172)
#> search[ 2.475e+16 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-09) None Grid-point #19 at 2.475e+17 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+17
#> Next point at 2.475e+18 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#> search[ 2.475e+15 ] = 775.803(46.7172)
#> search[ 2.475e+16 ] = 775.803(46.7172)
#> search[ 2.475e+17 ] = 775.803(46.7172)
#>
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(8.98933e-10) None Grid-point #20 at 2.475e+18 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+18
#> Next point at 2.475e+19 with value 0 and continue = 1
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#> search[ 2.475e+15 ] = 775.803(46.7172)
#> search[ 2.475e+16 ] = 775.803(46.7172)
#> search[ 2.475e+17 ] = 775.803(46.7172)
#> search[ 2.475e+18 ] = 775.803(46.7172)
#>
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #1 Rep #1 pred log like = 764.125
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #2 Rep #1 pred log like = 802.186
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #3 Rep #1 pred log like = 809.911
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #4 Rep #1 pred log like = 829.657
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #5 Rep #1 pred log like = 803.252
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #6 Rep #1 pred log like = 774.978
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #7 Rep #1 pred log like = 771.948
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #8 Rep #1 pred log like = 809.556
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #9 Rep #1 pred log like = 730.487
#> Running at Laplace(2.84268e-10) None Grid-point #21 at 2.475e+19 Fold #10 Rep #1 pred log like = 661.93
#> AvgPred = 775.803 with stdev = 46.7172
#> Completed at 2.475e+19
#> Next point at 6.1351e+11 with value 775.803 and continue = 0
#> search[ 0.2475 ] = 775.802(46.7085)
#> search[ 2.475 ] = 775.803(46.7144)
#> search[ 24.75 ] = 775.803(46.7163)
#> search[ 247.5 ] = 775.803(46.7169)
#> search[ 2475 ] = 775.803(46.7171)
#> search[ 24750 ] = 775.803(46.7171)
#> search[ 247500 ] = 775.803(46.7171)
#> search[ 2.475e+06 ] = 775.803(46.7172)
#> search[ 2.475e+07 ] = 775.803(46.7172)
#> search[ 2.475e+08 ] = 775.803(46.7172)
#> search[ 2.475e+09 ] = 775.803(46.7172)
#> search[ 2.475e+10 ] = 775.803(46.7172)
#> search[ 2.475e+11 ] = 775.803(46.7172)
#> search[ 2.475e+12 ] = 775.803(46.7172)
#> search[ 2.475e+13 ] = 775.803(46.7172)
#> search[ 2.475e+14 ] = 775.803(46.7172)
#> search[ 2.475e+15 ] = 775.803(46.7172)
#> search[ 2.475e+16 ] = 775.803(46.7172)
#> search[ 2.475e+17 ] = 775.803(46.7172)
#> search[ 2.475e+18 ] = 775.803(46.7172)
#> search[ 2.475e+19 ] = 775.803(46.7172)
#>
#>
#> Maximum predicted log likelihood (775.803) estimated at:
#> 6.1351e+11 (variance)
#> 1.80553e-06 (lambda)
#>
#> Fitting model at optimal hyperparameter
#> Using prior: Laplace(1.80553e-06) None
#Find out what the optimal hyperparameter was:
getHyperParameter(fit)
#> [1] 6.1351e+11
#Extract the current log-likelihood, and coefficients
logLik(fit)
#> 'log Lik.' -2193.651 (df=3)
coef(fit)
#> (Intercept) 1 2
#> -3.61883104 0.06239337 0.04106083
#We can only retrieve the confidence interval for unregularized coefficients:
confint(fit, c(0))
#> Using 1 thread(s)
#> covariate 2.5 % 97.5 % evaluations
#> (Intercept) 0 -3.649159 -3.588779 22