Stores the results of a method on the OHDSI Methods Benchmark in a standardized format, for example for use in the Method Evaluation Shiny app.
packageOhdsiBenchmarkResults( estimates, controlSummary, analysisRef, databaseName, exportFolder, referenceSet = "ohdsiMethodsBenchmark" )
A data frame containing the estimates. See details for required columns.
A data frame with the summary of the controls as generated by the
A file describing the various analyses that were performed. See details for required columns.
A character string to identify the database the method was executed on.
The folder where the output CSV files will written.
The name of the reference set for which to package the results. Currently supported are "ohdsiMethodsBenchmark" and "ohdsiDevelopment".
estimates argument should have the following columns: "targetId", "outcomeId",
"analysisId", "logRr", "seLogRr", "ci95Lb", "ci95Ub".
analysisRef argument should have the following columns: "analysisId", "method",
"comparative", "nesting", "firstExposureOnly"
outcomeId fields identify the specific control, and should
correspond to those in the controlSummary object.
analysisId field is an integer that identifies a specific variant of the method. For
example, if the method is 'CohortMethod', analysisId = 1 could identify a set of settings using
propensity score matching, and analysisId = 2 could identify a set of settings using
ci95Ub correspond to the log of the effect
estimate (e.g. the hazard ratio), the standard error, and the upper and lower bound of the effect
size estimate, as produced by the method.
method is a character string identifyign the method (e.g. "CohortMethod").
comparative is a boolean indicating whether the analysis can also be considerd to perform
comparative effect estimation (comparing the target to the comparator).
nesting is a boolean indicating whether the analysis is nested in the nesting cohorts
identified in the gold standard.
firstExposureOnly is a boolean indicating whether only the first exposure was used in the