Function to figure out the target, comparator, outcome and indication ids of interest for the quarto report based on the user inputs

Function to figure out the target, comparator, outcome and indication ids of interest for the quarto report based on the user inputs

Usage

restrictCohortDefinitionsForQuarto(
  connectionHandler,
  schema,
  cohortDefinitions,
  targetId,
  outcomeIds,
  comparatorIds,
  restrictTargetToIndications,
  indicationIds,
  includeCohortMethod
)

Arguments

connectionHandler

A connection handler that connects to the database and extracts sql queries. Create a connection handler via `ResultModelManager::ConnectionHandler$new()`.

schema

The result database schema (e.g., 'main' for sqlite)

cohortDefinitions

The output of `processCohortDefinitionsForQuarto()`

targetId

a parent target id

outcomeIds

a vector of outcome ids

comparatorIds

NULL or a vector of comparator parent ids

restrictTargetToIndications

whether to restrict the target ids to cohorts nested in indicationIds

indicationIds

The indication ids of interest for restrictTargetToIndications

includeCohortMethod

If TRUE, when comparatorIds is NULL all comparators included in CohortMethod are included in the report

Value

A list of targetIdsOfInterest that is a vector of cohortIds that are targets of interest to include in the report, comparatorIds a vector of cohortIds that are comparators, comparatorIdsOfInterest a vector of cohortIds that are comparators of interest, outcomeIdsOfInterest a vector of cohortIds that are outcomes of interest and indicationIdsOfInterest a vector of cohortIds that are indications of interest.

Details

This function finds the targets, comparators, indications and outcomes of interest based on the user inputs for quarto report generation.

See also

Other Cohorts: getCohortAttrition(), getCohortCounts(), getCohortDefinitions(), getCohortInclusionRules(), getCohortInclusionStats(), getCohortInclusionSummary(), getCohortMeta(), getCohortSubsetAttrition(), getCohortSubsetDefinitions(), getSubsetText(), processCohortDefinitionsForQuarto(), processCohorts()