Add the hospital frailty risk score as defined in Gilbert et al. (2018) (doi:10.1016/S0140-6736(18)30668-8 )

Usage

addHospitalFrailtyRiskScore(
  x,
  indexDate = "cohort_start_date",
  conceptSet = getIndexCodelist("hospital_frailty_risk_score"),
  categories = list(low = c(0, 5), intermediate = c(5, 15), high = c(15, Inf)),
  window = NULL,
  nameStyle = "hfrs",
  name = tableName(x)
)

Arguments

x: A cdm_table containing a person identifier column named person_id or subject_id.
indexDate: A character string naming the Date column in x that defines the index date.
conceptSet: A named concept set supplied as a codelist, codelist_with_details, concept_set_expression, or named list of concept IDs. It must contain abnormal_results_of_function_studies, abnormalities_of_gait_and_mobility, abnormalities_of_heart_beat, acute_renal_failure, agent_resistant_to_penicillin_and_related_antibiotics, alzheimers_disease, artificial_opening_status, blindness_and_low_vision, calculus_of_kidney_and_ureter, care_involving_use_of_rehabilitation_procedures, carrier_of_infectious_disease, cellulitis, cerebral_infarction, cerebral_ischaemic_attacks, chronic_renal_failure, cognitive_functions_and_awareness, convulsions_not_elsewhere_classified, decubitus_ulcer, deficiency_of_other_b_group_vitamins, degenerative_diseases_of_nervous_system, delirium, dementia_in_alzheimers_disease, dependence_on_enabling_machines_and_devices, depressive_episode, diarrhoea_and_gastroenteritis, disorders_of_kidney_and_ureter, disorders_of_mineral_metabolism, duodenal_ulcer, dysphagia, epilepsy, exposure_to_unspecified_factor, fall, fall_involving_bed, fall_on_and_from_stairs_and_steps, fever_of_unknown_origin, fluid_electrolyte_and_acid_base_balance, fracture_of_femur, fracture_of_lumbar_spine_and_pelvis, fracture_of_ribs_sternum_and_thoracic_spine, fracture_of_shoulder_and_upper_arm, gangrene_not_elsewhere_classified, general_sensations_and_perceptions, hemiplegia, hypotension, infections_of_skin, intracranial_injury, mental_and_behavioural_disorders_due_to_use_of_alcohol, nausea_and_vomiting, nervous_and_musculoskeletal_systems_r_29_6_tendency_to_fall, nosocomial_condition, open_wound_of_forearm, open_wound_of_head, osteoporosis_with_pathological_fracture, osteoporosis_without_pathological_fracture, other_abnormal_findings_of_blood_chemistry, other_anaemias, other_and_unspecified_injuries_of_head, other_arthrosis, other_bacterial_agents, other_bacterial_intestinal_infections, other_cerebrovascular_diseases, other_diseases_of_digestive_system, other_disorders_of_pancreatic_internal_secretion, other_disorders_of_urinary_system, other_fall_on_same_level, other_functional_intestinal_disorders, other_hearing_loss, other_joint_disorders_not_elsewhere_classified, other_medical_procedures, other_noninfective_gastroenteritis_and_colitis, other_septicaemia, other_soft_tissue_disorders_not_elsewhere_classified, parkinsons_disease, personal_history_of_other_diseases_and_conditions, personal_history_of_risk_factors, pneumonia_organism_unspecified, pneumonitis_due_to_solids_and_liquids, polyarthrosis, problems_related_to_care_provider_dependency, problems_related_to_life_management_difficulty, problems_related_to_medical_facilities_and_other_health_care, problems_related_to_social_environment, prosthetic_devices_implants, respiratory_failure_not_elsewhere_classified, retention_of_urine, scoliosis, senility, sequelae_of_cerebrovascular_disease, somnolence_stupor_and_coma, speech_disturbances_not_elsewhere_classified, spinal_stenosis_secondary_code_only, streptococcus_and_staphylococcus, superficial_injury_of_head, superficial_injury_of_lower_leg, symptoms_and_signs_concerning_food_and_fluid_intake, symptoms_and_signs_involving_emotional_state, syncope_and_collapse, thyrotoxicosis_hyperthyroidism, ulcer_of_lower_limb_not_elsewhere_classified, unknown_and_unspecified_causes_of_morbidity, unspecified_acute_lower_respiratory_infection, unspecified_dementia, unspecified_fall, unspecified_haematuria, unspecified_renal_failure, unspecified_urinary_incontinence, vascular_dementia, vitamin_d_deficiency, volume_depletion as concepts. By default, internal codelists are used.
categories: A named list of numeric vectors, each containing the lower and upper bounds of a score interval. An additional column with the suffix _categories is added. Intervals are evaluated in the order supplied, and missing scores are labelled missing.
window: NULL to use the windows defined by the index components, or a numeric vector of length two, c(min, max), to override the component windows in days relative to indexDate. Use -Inf or Inf for an unbounded lower or upper limit.
nameStyle: A character string specifying the name of the new column.
name: A character string specifying the name of the output table. If NULL, a temporary table is created.

Value

The table x with a new column containing the Hospital Frailty Risk Score value.

Examples

# \donttest{
library(omock)
library(duckdb)
library(OmopIndices)
library(dplyr)
library(CohortConstructor)

cdm <- mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
#> ℹ Loading bundled GiBleed tables from package data.
#> ℹ Adding drug_strength table.
#> ℹ Creating local <cdm_reference> object.
#> ℹ Inserting <cdm_reference> into duckdb.
#> duckdb keeps downloaded extensions and secrets in a temporary directory:
#> ℹ /tmp/Rtmp5IUc4q/duckdb
#> This is removed when the R session ends.
#> • Extensions are re-downloaded each session.
#> • Secrets are lost.
#> ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
#> ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
#> ℹ See ?duckdb_storage for details and alternatives.
cdm$cohort <- conceptCohort(
  cdm = cdm,
  conceptSet = list(sinusitis = c(257012L, 4283893L, 4294548L, 40481087L)),
  name = "cohort"
)
#> ℹ Subsetting table condition_occurrence using 4 concepts with domain:
#>   condition.
#> ℹ Combining tables.
#> ℹ Creating cohort attributes.
#> ℹ Applying cohort requirements.
#> ℹ Merging overlapping records.
#> ✔ Cohort cohort created.

cdm$cohort |>
  addHospitalFrailtyRiskScore() |>
  select(subject_id, cohort_start_date, hfrs, hfrs_categories) |>
  glimpse()
#> Warning: 669 unique codelist concept IDs are not present in `cdm$concept`.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • abnormalities_of_gait_and_mobility: 437643, 4021489, 4096848, 4248196,
#>   36714126
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • abnormalities_of_heart_beat: 315078, 444070, 4145848, 4169095, 4262562
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • acute_renal_failure: 197320, 197329, 432961, 45757466
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • agent_resistant_to_penicillin_and_related_antibiotics: 4249827
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • alzheimers_disease: 4218017, 4220313
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • calculus_of_kidney_and_ureter: 201620, 201916, 4148260, 4319447
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • cellulitis: 76492, 435613, 4065997, 4181064, 4263898
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • cognitive_functions_and_awareness: 439147, 4198081, 4229448, 4268911, 4293175
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • convulsions_not_elsewhere_classified: 377091, 444413
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • decubitus_ulcer: 37159532, 37160747, 37160748, 37160749, 37160750
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • deficiency_of_other_b_group_vitamins: 432580, 435787, 437246
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • delirium: 373995, 37111242
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • dementia_in_alzheimers_disease: 4218017, 4220313
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • diarrhoea_and_gastroenteritis: 201618, 4043371
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • disorders_of_kidney_and_ureter: 36716270, 40483287, 42536547
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 10 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 10 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • dysphagia: 31317
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • exposure_to_unspecified_factor: 440279, 4156363
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • fall: 437175
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • fall_involving_bed: 436882
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • fall_on_and_from_stairs_and_steps: 441749
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • fever_of_unknown_origin: 437663, 4164645, 4226022
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 10 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 10 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 21 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 21 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 21 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 21 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 21 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 21 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 24 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 24 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • gangrene_not_elsewhere_classified: 439928
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • general_sensations_and_perceptions: 433031, 4024707, 4164151, 4275889
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • hemiplegia: 372613, 374022, 375528
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • hypotension: 317002, 319041, 4112334, 4120275
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • infections_of_skin: 133547, 443600, 4032277
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 17 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 17 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • nausea_and_vomiting: 27674
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • nosocomial_condition: 440005
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • open_wound_of_forearm: 4053599, 4053600, 4062394
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 14 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 14 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 13 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 13 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_abnormal_findings_of_blood_chemistry: 436230, 4166144
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_anaemias: 432282, 4101584, 4204062, 4231887, 40599994
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_and_unspecified_injuries_of_head: 195398, 375415, 4057179, 4059253,
#>   4145094
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 22 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 22 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_diseases_of_digestive_system: 26727, 4103703, 4201745
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_disorders_of_pancreatic_internal_secretion: 24609, 193983, 4096804,
#>   4099656, 45757754
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_fall_on_same_level: 4140830
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • other_hearing_loss: 377574, 377889, 381306, 4150172, 37110393
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 61 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 61 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 36 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 36 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • parkinsons_disease: 381270
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • personal_history_of_other_diseases_and_conditions: 1340204
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • personal_history_of_risk_factors: 1340204, 37158897, 43530807
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • pneumonia_organism_unspecified: 256722, 4133224, 4310964
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • problems_related_to_care_provider_dependency: 4022076, 42535090, 43020485
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • problems_related_to_medical_facilities_and_other_health_care: 4019827,
#>   4031369, 4082086, 4145781, 4148887
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 7 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 7 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • prosthetic_devices_implants: 4155079, 4158481, 4308394, 4309318, 43021248
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 9 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 9 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • retention_of_urine: 192450
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 24 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 24 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • senility: 4090207
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • sequelae_of_cerebrovascular_disease: 434056, 4111720, 4111721, 4112026,
#>   43530623
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • somnolence_stupor_and_coma: 376961, 380834, 4158978, 4229897
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • speech_disturbances_not_elsewhere_classified: 435642, 4024716, 4196636
#> ! 3 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • spinal_stenosis_secondary_code_only: 77079
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 6 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 6 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • superficial_injury_of_lower_leg: 77734, 78619, 4052655, 4106355
#> ! 4 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • syncope_and_collapse: 4206148
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: 8 unique codelist concept IDs are not present in `cdm$concept`.
#> ! 8 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • ulcer_of_lower_limb_not_elsewhere_classified: 197304
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unknown_and_unspecified_causes_of_morbidity: 4192174
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_acute_lower_respiratory_infection: 4307774
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_dementia: 4182210
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_fall: 436583
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_haematuria: 437038
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_renal_failure: 192359
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • unspecified_urinary_incontinence: 197672
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • vascular_dementia: 379778, 443605, 4046089, 4046090, 4047747
#> ! 5 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • vitamin_d_deficiency: 436070, 438719
#> ! 2 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Warning: The following codelist concept IDs are not present in `cdm$concept`:
#> • volume_depletion: 37311320
#> ! 1 concept(s) from domain NA eliminated as it is not supported.
#> ℹ Supported domains are: device, specimen, measurement, drug, condition,
#>   observation, procedure, episode, and visit.
#> Rows: ??
#> Columns: 4
#> $ subject_id        <int> 4960, 36, 377, 697, 1118, 1159, 1529, 2109, 2109, 22…
#> $ cohort_start_date <date> 1931-03-28, 1970-05-22, 1999-10-30, 2017-11-07, 201…
#> $ hfrs              <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
#> $ hfrs_categories   <chr> "low", "low", "low", "low", "low", "low", "low", "lo…
# }