Phenelope

Introduction

The goal of Phenelope is to provide a tool for OMOP users to create a concept set. Requires access to an OMOP CDM and to a Large Language Model (LLM) with API access.

Process Steps

1. Determine the health condition of interest
2. Find an approriate conceptId that is a good starting point for creating a concept set
3. Set up parameters to run the function createConceptSet()
4. Run createConceptSet()

Technology

Phenelope is an R package.

System Requirements

Requires R (version 4.4.0 or higher).

Installation

1. See the instructions at here for configuring your R environment, including Java.

2. Install Phenelope using:

   remotes::install_github("OHDSI/Phenelope")

User Documentation

1. Documentation can be found on the package website.

2. PDF versions of the documentation are also available:

   • Package manual: Phenelope manual

   • Vignette: Creating LLM Concept Sets

Support

• Developer questions/comments/feedback: OHDSI Forum

• We use the GitHub issue tracker for all bugs/issues/enhancements

Contributing

Read here how you can contribute to this package.

License

Phenelope is licensed under Apache License 2.0

Development

Phenelope is being developed in R Studio.

Development status

Beta

Acknowledgements

• The package is maintained by Joel Swerdel and has been developed with major contributions from Martijn Schuemie and Anna Ostropolets.