Observation
Reading from Synthea tables allergies.csv
| Destination Field | Source field | Logic | Comment field |
|---|---|---|---|
| observation_id | |||
| person_id | patient | Map by mapping person.person_source_value to patient. Find person.person_id by mapping encouters.patient to person.person_source_value. | |
| observation_concept_id | code | Use code to lookup target_concept_id in CTE_TARGET_VOCAB_MAP: select ctvm.target_concept_id from allergies a join cte_target_vocab_map ctvm on ctvm.source_code = a.code and ctvm.target_domain_id = ‘Observation’ and ctvm.target_vocabulary_id = ‘SNOMED’ | |
| observation_date | start | ||
| observation_datetime | start | ||
| observation_type_concept_id | |||
| value_as_number | |||
| value_as_string | |||
| value_as_concept_id | |||
| qualifier_concept_id | |||
| unit_concept_id | |||
| provider_id | |||
| visit_occurrence_id | encounter | Lookup visit_occurrence_id using encounter, joining to temp table defined in AllVisitTable.sql. | |
| visit_detail_id | |||
| observation_source_value | code | ||
| observation_source_concept_id | code | Use code to lookup source_concept_id in CTE_SOURCE_VOCAB_MAP: select csvm.source_concept_id from cte_source_vocab_map csvm join allergies a on csvm.source_code = a.code and csvm.source_vocabulary_id = ‘SNOMED’ | |
| unit_source_value | |||
| qualifier_source_value |
Reading from Synthea table conditions.csv
| Destination Field | Source field | Logic | Comment field |
|---|---|---|---|
| observation_id | |||
| person_id | patient | Map by mapping person.person_source_value to patient. Find person.person_id by mapping encouters.patient to person.person_source_value. | |
| observation_concept_id | code | Use code to lookup target_concept_id in CTE_TARGET_VOCAB_MAP: select ctvm.target_concept_id from conditions c join cte_target_vocab_map ctvm on ctvm.source_code = c.code and ctvm.target_domain_id = ‘Observation’ and ctvm.target_vocabulary_id = ‘SNOMED’ | |
| observation_date | start | ||
| observation_datetime | start | ||
| observation_type_concept_id | encounter patient | ||
| value_as_number | |||
| value_as_string | |||
| value_as_concept_id | |||
| qualifier_concept_id | |||
| unit_concept_id | |||
| provider_id | |||
| visit_occurrence_id | encounter | Lookup visit_occurrence_id using encounter, joining to temp table defined in AllVisitTable.sql. | |
| visit_detail_id | |||
| observation_source_value | code | ||
| observation_source_concept_id | code | Use code to lookup source_concept_id in CTE_SOURCE_VOCAB_MAP: select csvm.source_concept_id from cte_source_vocab_map csvm join conditions c on csvm.source_code = c.code and csvm.source_vocabulary_id = ‘SNOMED’ | |
| unit_source_value | |||
| qualifier_source_value |