
Generates a mock procedure occurrence table and integrates it into an existing CDM object.
Source:R/mockProcedureOccurrence.R
mockProcedureOccurrence.RdThis function simulates condition occurrences for individuals within a specified cohort. It helps create a realistic dataset by generating condition records for each person, based on the number of records specified per person.The generated data are aligned with the existing observation periods to ensure that all conditions are recorded within valid observation windows.
Arguments
- cdm
A local
cdm_referenceobject used as the base structure to update.- recordPerson
An integer specifying the expected number of condition records to generate per person.This parameter allows the simulation of varying frequencies of condition occurrences among individuals in the cohort, reflecting the variability seen in real-world medical data.
- seed
An optional integer used to set the random seed for reproducibility. If
NULL, the seed is not set.
Examples
# \donttest{
library(omock)
library(dplyr)
# Create a mock CDM reference and add condition occurrences
cdm <- mockCdmReference() |>
mockPerson() |>
mockObservationPeriod() |>
mockProcedureOccurrence(recordPerson = 2)
# View the generated condition occurrence data
cdm$procedure_occurrence |>
glimpse()
#> Rows: 20
#> Columns: 15
#> $ procedure_concept_id <int> 4012925, 4012925, 4012925, 4012925, 401292…
#> $ person_id <int> 9, 3, 2, 1, 2, 2, 8, 7, 7, 1, 9, 3, 2, 7, …
#> $ procedure_date <date> 1961-06-25, 2003-12-19, 2003-09-17, 1996-…
#> $ procedure_end_date <date> 1979-08-18, 2007-11-10, 2004-01-02, 2013-…
#> $ procedure_occurrence_id <int> 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13,…
#> $ procedure_type_concept_id <int> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
#> $ procedure_datetime <dttm> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
#> $ modifier_concept_id <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ quantity <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ provider_id <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ visit_occurrence_id <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ visit_detail_id <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ procedure_source_value <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ procedure_source_concept_id <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
#> $ modifier_source_value <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
# }