Changes:
- remove dependence on
BH
- improvements on adaptive likelihood profiling
- add
auto option to cvRepetitions
- bumped explicit C++11 requirement up to R v4.1
- removed deprecated use of
dbplyr:::$.tbl_lazy
- breaking change in
dbplyr v2.4.0
Changes:
- fix uninitialized value in detected in
computeAsymptoticPrecisionMatrix(); value was priorType
- fix memory leak caused by call to
::Rf_error()
- fix line-endings on Makevar on windows
- bump for R 4.2
- fix CRAN warnings
- used
minValues
- fix CRAN notes
- remove explicit dependence on C++11 (except for R <= 4.0)
Changes:
- fix small memory leak caused by direct call to ‘::Rf_error()’
- disable JVM calls on CRAN due to uninitialized memory in Java JVM
Changes:
- fixed likelihood profiling when non-convex due to numerical instability
- fixed parsing of 64-bit covariate IDs
- fix BLR convergence criterion when there are 0 (survival) events
- add Jeffrey’s prior for single regression coefficient
Changes:
- adaptive likelihood profiling when objective function is concave.
Changes:
- specify new option
nocenter in survival package when testing predicted hazard function
Changes:
- implement Fine-Gray competing risks regression
- fixed
getCyclopsProfileLogLikelihood when starting with extreme coefficients
Changes:
- switch to
Andromeda from ff to hold large datasets. This change breaks API
Changes:
- removed, unused variable imputation functions that contained a
std::exit
Changes:
- fix computation under conditional Poisson models by reverting to v1.3.4-style loop
- fix several unit-tests for compatibility with
R 4.0 factors
- add ability to profile likelihood function in parallel
- add initial infrastructure for competing risks models
Changes:
- use
RNGversion("3.5.0") in unit-tests to reproduce old RNG behavior
- fix prior-type checks when specifying multiple types
Changes:
- patch two memory leaks in
ModelData.cpp and ModelSpecifics.hpp
Changes:
- simplify internal transformation-reductions loops
- implemented non-negative weights
- allow for run-time selection of 32-/64-bit reals
- remove dependence on GNUmake
- temporarily remove dependence on
RcppParallel (until TBB is again R-compliant)
Changes:
- fix undeclared dependencies in unit-tests:
MASS and microbenchmarks
- fix issues with ATLAS compilation
- add contexts to testthat files
- fix ASAN errors in
AbstractModelSpecifics
Changes:
- fix testthat expected error message
Changes:
- explicitly includes
<complex> header, needed for R 3.5 builds
- remove
pragma statements used to quiet RcppEigen and RcppParallel
Changes:
- fixes covariate indices returned from
.checkCovariates when excluding covariates from regularization
Changes:
- implements specialized priors through callbacks for use, for example, in the BrokenAdaptiveRidge package to provide L0-based model selection
- implements specialized control through callbacks for use, for example, auto-and-grid-based cross-validation hyperparameter searches
- removes src/boost that clashes with BH 1.65.0
Changes:
- fixed
predict error with ff.data.frame with size == 0
Changes:
- fixed
solaris build errors
- added compatibility for C++14 (make_unique)
- fixed multiple ASan warnings
Changes: initial submission to CRAN