Function reference • Cyclops

All functions
`Multitype()`	Create a multitype outcome object
`coef(<cyclopsFit>)`	Extract model coefficients
`confint(<cyclopsFit>)`	Confidence intervals for Cyclops model parameters
`convertToCyclopsData()`	Convert data from two data frames or ffdf objects into a CyclopsData object
`convertToTimeVaryingCoef()`	Convert short sparse covariate table to long sparse covariate table for time-varying coefficients.
`coverage()`	Coverage
`createAutoGridCrossValidationControl()`	Create a Cyclops control object that supports multiple hyperparameters
`createControl()`	Create a Cyclops control object
`createCyclopsData()`	Create a Cyclops data object
`createNonSeparablePrior()`	Create a Cyclops prior object that returns the MLE of non-separable coefficients
`createParameterizedPrior()`	Create a Cyclops parameterized prior object
`createPrior()`	Create a Cyclops prior object
`createWeightBasedSearchControl()`	Create a Cyclops control object that supports in- / out-of-sample hyperparameter search using weights
`cyclops`	Cyclops: Cyclic coordinate descent for logistic, Poisson and survival analysis
`fitCyclopsModel()`	Fit a Cyclops model
`fitCyclopsSimulation()`	Fit simulated data
`getCovariateIds()`	Get covariate identifiers
`getCovariateTypes()`	Get covariate types
`getCyclopsProfileLogLikelihood()`	Profile likelihood for Cyclops model parameters
`getFineGrayWeights()`	Creates a `Surv` object that forces in competing risks and the IPCW needed for Fine-Gray estimation.
`getFloatingPointSize()`	Get floating point size
`getHyperParameter()`	Get hyperparameter
`getNumberOfCovariates()`	Get total number of covariates
`getNumberOfRows()`	Get total number of rows
`getNumberOfStrata()`	Get number of strata
`getUnivariableCorrelation()`	Get univariable correlation
`getUnivariableSeparability()`	Get univariable linear separability
`isInitialized()`	Check if a Cyclops data object is initialized
`logLik(<cyclopsFit>)`	Extract log-likelihood
`meanLinearPredictor()`	Calculates xbar*beta
`mse()`	Mean squared error
`oxford`	Oxford self-controlled case series data
`predict(<cyclopsFit>)`	Model predictions
`print(<cyclopsData>)`	Print a Cyclops data object
`print(<cyclopsFit>)`	Print a Cyclops model fit object
`readCyclopsData()`	Read Cyclops data from file
`simulateCyclopsData()`	Simulation Cyclops dataset
`splitTime()`	Split the analysis time into several intervals for time-varying coefficients.
`summary(<cyclopsData>)`	Cyclops data object summary
`survfit(<cyclopsFit>)`	Calculate baseline hazard function
`vcov(<cyclopsFit>)`	Calculate variance-covariance matrix for a fitted Cyclops model object

Reference

All functions