Fit simulated data

Source: R/Simulation.R

fitCyclopsSimulation fits simulated Cyclops data using Cyclops or a standard routine. This function is useful for simulation studies comparing the performance of Cyclops when considering large, sparse datasets.

fitCyclopsSimulation(
  sim,
  useCyclops = TRUE,
  model = "logistic",
  coverage = TRUE,
  includePenalty = FALSE
)

Arguments

sim

A simulated Cyclops dataset generated via simulateCyclopsData

useCyclops

Logical: use Cyclops or a standard routine

model

String: Fitted regression model type

coverage

Logical: report coverage statistics

includePenalty

Logical: include regularized regression penalty in computing profile likelihood based confidence intervals