Export SCCSresults to CSV files

Source: R/Export.R

Export SCCSresults to CSV files

exportToCsv(
  outputFolder,
  exportFolder = file.path(outputFolder, "export"),
  databaseId = 1,
  minCellCount = 5,
  maxCores = 1,
  sccsDiagnosticThresholds = createSccsDiagnosticThresholds()
)

Arguments

outputFolder

The folder where runCmAnalyses() generated all results.

exportFolder

The folder where the CSV files will written.

databaseId

A unique ID for the database. This will be appended to most tables.

minCellCount

To preserve privacy: the minimum number of subjects contributing to a count before it can be included in the results. If the count is below this threshold, it will be set to -minCellCount.

maxCores

Maximum number of CPU cores to use.

sccsDiagnosticThresholds

An object of type SccsDiagnosticThresholds as created using createSccsDiagnosticThresholds().

Value

Does not return anything. Is called for the side-effect of populating the exportFolder

with CSV files.

Details

This requires that runSccsAnalyses() has been executed first. It exports all the results in the outputFolder to CSV files for sharing with other sites.