Create aggregate covariate study settings

createAggregateCovariateSettings(
  targetIds,
  outcomeIds,
  minPriorObservation = 0,
  outcomeWashoutDays = 0,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  covariateSettings = FeatureExtraction::createCovariateSettings(useDemographicsGender =
    T, useDemographicsAge = T, useDemographicsAgeGroup = T, useDemographicsRace = T,
    useDemographicsEthnicity = T, useDemographicsIndexYear = T, useDemographicsIndexMonth
    = T, useDemographicsTimeInCohort = T, useDemographicsPriorObservationTime = T,
    useDemographicsPostObservationTime = T, useConditionGroupEraLongTerm = T,
    useDrugGroupEraOverlapping = T, useDrugGroupEraLongTerm = T,
    useProcedureOccurrenceLongTerm = T, useMeasurementLongTerm = T, 
    
    useObservationLongTerm = T, useDeviceExposureLongTerm = T,
    useVisitConceptCountLongTerm = T, useConditionGroupEraShortTerm = T,
    useDrugGroupEraShortTerm = T, useProcedureOccurrenceShortTerm = T,
    useMeasurementShortTerm = T, useObservationShortTerm = T, useDeviceExposureShortTerm
    = T, useVisitConceptCountShortTerm = T, endDays = 0, longTermStartDays = -365,
    shortTermStartDays = -30),
  caseCovariateSettings = createDuringCovariateSettings(useConditionGroupEraDuring = T,
    useDrugGroupEraDuring = T, useProcedureOccurrenceDuring = T, useDeviceExposureDuring
    = T, useMeasurementDuring = T, useObservationDuring = T, useVisitConceptCountDuring =
    T),
  casePreTargetDuration = 365,
  casePostOutcomeDuration = 365,
  extractNonCaseCovariates = T
)

Arguments

targetIds: A list of cohortIds for the target cohorts
outcomeIds: A list of cohortIds for the outcome cohorts
minPriorObservation: The minimum time (in days) in the database a patient in the target cohorts must be observed prior to index
outcomeWashoutDays: Patients with the outcome within outcomeWashout days prior to index are excluded from the risk factor analysis
riskWindowStart: The start of the risk window (in days) relative to the `startAnchor`.
startAnchor: The anchor point for the start of the risk window. Can be `"cohort start"` or `"cohort end"`.
riskWindowEnd: The end of the risk window (in days) relative to the `endAnchor`.
endAnchor: The anchor point for the end of the risk window. Can be `"cohort start"` or `"cohort end"`.
covariateSettings: An object created using FeatureExtraction::createCovariateSettings
caseCovariateSettings: An object created using createDuringCovariateSettings
casePreTargetDuration: The number of days prior to case index we use for FeatureExtraction
casePostOutcomeDuration: The number of days prior to case index we use for FeatureExtraction
extractNonCaseCovariates: Whether to extract aggregate covariates and counts for patients in the targets and outcomes in addition to the cases

Value

A list with the settings