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Create risk factor study settings

Source: R/RiskFactorAnalysis.R
createRiskFactorSettings.Rd

Create risk factor study settings

Usage

createRiskFactorSettings(
  studyPopulationSettings,
  outcomeIds,
  outcomeWashoutDays = 0,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  covariateSettings = FeatureExtraction::createCovariateSettings(useDemographicsGender =
    TRUE, useDemographicsAge = TRUE, useDemographicsAgeGroup = TRUE, useDemographicsRace
    = TRUE, useDemographicsEthnicity = TRUE, useDemographicsIndexYear = TRUE,
    useDemographicsIndexMonth = TRUE, useDemographicsTimeInCohort = TRUE,
    useDemographicsPriorObservationTime = TRUE, useDemographicsPostObservationTime =
    TRUE, useConditionGroupEraLongTerm = TRUE, useDrugGroupEraOverlapping = TRUE,
    useDrugGroupEraLongTerm = TRUE, useProcedureOccurrenceLongTerm = TRUE, 
    
    useMeasurementLongTerm = TRUE, useObservationLongTerm = TRUE,
    useDeviceExposureLongTerm = TRUE, useVisitConceptCountLongTerm = TRUE,
    useConditionGroupEraShortTerm = TRUE, useDrugGroupEraShortTerm = TRUE,
    useProcedureOccurrenceShortTerm = TRUE, useMeasurementShortTerm = TRUE,
    useObservationShortTerm = TRUE, useDeviceExposureShortTerm = TRUE,
    useVisitConceptCountShortTerm = TRUE, endDays = 0, longTermStartDays = -365,
    shortTermStartDays = -30)
)

Arguments

studyPopulationSettings

A list of objects created using createStudyPopulationSettings that specifies target cohorts and inclusion criteria

outcomeIds

A list of cohortIds for the outcome cohorts

outcomeWashoutDays

A single integer value. Patients with the outcome within outcomeWashout days prior to index are excluded from the risk factor analysis

riskWindowStart

The start of the risk window (in days) relative to the `startAnchor`.

startAnchor

The anchor point for the start of the risk window. Can be `"cohort start"` or `"cohort end"`.

riskWindowEnd

The end of the risk window (in days) relative to the `endAnchor`.

endAnchor

The anchor point for the end of the risk window. Can be `"cohort start"` or `"cohort end"`.

covariateSettings

An object created using FeatureExtraction::createCovariateSettings

Value

A list with the settings

See also

Other Aggregate: createCaseSeriesSettings(), createTargetBaselineSettings()

Examples


riskFactorSetting <- createRiskFactorSettings(
  studyPopulationSettings = createStudyPopulationSettings(
    targetIds = c(1,2),
    minPriorObservation = 365,
    limitToFirstInNDays = 99999
  ),
  outcomeIds = c(3),
  outcomeWashoutDays = 90,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start"
)