Create aggregate covariate study settings

Create aggregate covariate study settings

Usage

createCaseSeriesSettings(
  studyPopulationSettings,
  outcomeIds,
  outcomeWashoutDays = 0,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  caseCovariateSettings = createDuringCovariateSettings(useConditionGroupEraDuring =
    TRUE, useDrugGroupEraDuring = TRUE, useProcedureOccurrenceDuring = TRUE,
    useDeviceExposureDuring = TRUE, useMeasurementDuring = TRUE, useObservationDuring =
    TRUE, useVisitConceptCountDuring = TRUE),
  casePreTargetDuration = 365,
  casePostOutcomeDuration = 365
)

Arguments

studyPopulationSettings

A List of object created using createStudyPopulationSettings that specifies target cohorts and inclusion criteria

outcomeIds

A list of cohortIds for the outcome cohorts

outcomeWashoutDays

A single integer value. Patients with the outcome within outcomeWashout days prior to index are excluded from the risk factor analysis

riskWindowStart

The start of the risk window (in days) relative to the `startAnchor`.

startAnchor

The anchor point for the start of the risk window. Can be `"cohort start"` or `"cohort end"`.

riskWindowEnd

The end of the risk window (in days) relative to the `endAnchor`.

endAnchor

The anchor point for the end of the risk window. Can be `"cohort start"` or `"cohort end"`.

caseCovariateSettings

An object created using createDuringCovariateSettings

casePreTargetDuration

A single integer value. The number of days prior to case index we use for FeatureExtraction

casePostOutcomeDuration

A single integer value. The number of days prior to case index we use for FeatureExtraction

Value

A list with the settings

See also

Other Aggregate: createRiskFactorSettings(), createTargetBaselineSettings()

Examples

caseSeriesSetting <- createCaseSeriesSettings(
  studyPopulationSettings = createStudyPopulationSettings(
    targetIds = c(1,2),
    minPriorObservation = 365,
    limitToFirstInNDays = 365
  ),
  outcomeIds = c(3),
  outcomeWashoutDays = 90,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  casePreTargetDuration = 365,
  casePostOutcomeDuration = 365
)