Export cohort method results to CSV files

Export cohort method results to CSV files

exportToCsv(
  outputFolder,
  exportFolder = file.path(outputFolder, "export"),
  databaseId,
  minCellCount = 5,
  maxCores = 1,
  cmDiagnosticThresholds = createCmDiagnosticThresholds()
)

Arguments

outputFolder

The folder where runCmAnalyses() generated all results.

exportFolder

The folder where the CSV files will written.

databaseId

A unique ID for the database. This will be appended to most tables.

minCellCount

To preserve privacy: the minimum number of subjects contributing to a count before it can be included in the results. If the count is below this threshold, it will be set to -minCellCount.

maxCores

How many parallel cores should be used?

cmDiagnosticThresholds

An object of type CmDiagnosticThresholds as created using createCmDiagnosticThresholds().

Value

Does not return anything. Is called for the side-effect of populating the exportFolder with CSV files.

Details

This requires that runCmAnalyses() has been executed first. It exports all the results in the outputFolder to CSV files for sharing with other sites.