- Removed percentage calculation from records field in CohortDiagnostics
- Updated the About module to reflect new module names and structure
- Updated module description vignette files to reflect new module names and structure
- Added interactive scatterplots for binary covariates when doing database and cohort comparisons in Characterization
- Fixed bug with orphan concepts not loading
- Removed CohortMethod/SCCS/EvidenceSyntheis modules as these are replaced with Estimation
- Fixed issue in DatabaseConnector check for pooled connections of sqlite databases on cohort diagnotiscs load (from main hotfix)
- Combined cohort method, sccs and evidence synthesis into one estimation module with shared target and outcome ids
- Characterizations now share the target id
- Updated tests to get them all working
- Cleaned R check (but cohort incidence still has many notes)
Fixed bug of orphan concepts report not displaying Fixed bug in orphan concepts where negative database ids were causing dynamic sql queries to crash
Fixed missing call to dplyr in CohortDiagnostics load up
Hotfix release to fix issue with cohort diagnostics reports hanging on load when using DatabaseConnector::dbListTables
on postgres backends
Fixed bug in cohort diagnostics incidence rate plots not showing for different strata
Fixed bug in cohort diagnostics load up of orphan concepts server causing app to crash on load
Support for data models from SCCS version 5.2.0 Support for data models from Cohort Method version 5.2.0 Fixes for CohortDiagnostics Orpahan concept table by re-writing with DB level pagination Automated release of Docker Images upon package release
edited characterization server to work with new aggregate features method in characterization package edited characterization server to work when one or more characterization result is missing edited evidence synth module to highlight the bayesian and fix issue with comparison names not showing
Bug Fixes: - Fix for CohortDiagnostic app not loading when characterization was set to FALSE
- updated all models to use the same resultDatabaseSettings
- made module function naming consistent (modules named after analysis packages)
- made table prefix inputs consistent across modules
- updated patientlevelprediction, cohortmethod and sccs to look similar.
- Updated Cohort Diagnostics characterization to improve overall performance
- Added plots for incidence in characterization module
- Added PheValuator package
- Numerous bug fixes (see github issues)
- Udated the style for Characterization
- added SCCS module (jpg)
- added meta (evidence synthesis) module
- removal of ggiraph package and replacement with plotly plots for CohortDiagnostics plots: Time Distributions, Overlap, Incidence and Compare Cohort Characterization (jpg)
- Fixed an issue with hide/show tabs and reactives in the plp viewer
- Fixed a glitchy prediction viewer
- Added Cohort Diagnostics module
- Changed module input to have connectionHandler
- cleaned check notes
- Version ready for release
- Test coverage > 80%
- Updated website
- Modules included for HADES pacakges: PatientLevelPrediction, DescriptiveStudies, CohortGenerator and CohortMethod