Fixed bug of orphan concepts report not displaying Fixed bug in orphan concepts where negative database ids were causing dynamic sql queries to crash

Fixed bug in cohort diagnostics incidence rate plots not showing for different strata

Fixed bug in cohort diagnostics load up of orphan concepts server causing app to crash on load

Support for data models from SCCS version 5.2.0 Support for data models from Cohort Method version 5.2.0 Fixes for CohortDiagnostics Orpahan concept table by re-writing with DB level pagination Automated release of Docker Images upon package release

edited characterization server to work with new aggregate features method in characterization package edited characterization server to work when one or more characterization result is missing edited evidence synth module to highlight the bayesian and fix issue with comparison names not showing

Bug Fixes: - Fix for CohortDiagnostic app not loading when characterization was set to FALSE

  • updated all models to use the same resultDatabaseSettings
  • made module function naming consistent (modules named after analysis packages)
  • made table prefix inputs consistent across modules
  • updated patientlevelprediction, cohortmethod and sccs to look similar.
  • Updated Cohort Diagnostics characterization to improve overall performance
  • Added plots for incidence in characterization module
  • Added PheValuator package
  • Numerous bug fixes (see github issues)
  • Udated the style for Characterization
  • added SCCS module (jpg)
  • added meta (evidence synthesis) module
  • removal of ggiraph package and replacement with plotly plots for CohortDiagnostics plots: Time Distributions, Overlap, Incidence and Compare Cohort Characterization (jpg)
  • Fixed an issue with hide/show tabs and reactives in the plp viewer
  • Fixed a glitchy prediction viewer
  • Added Cohort Diagnostics module
  • Changed module input to have connectionHandler
  • cleaned check notes
  • Preparing for HADES
  • Version ready for release
  • Test coverage > 80%
  • Updated website
  • Modules included for HADES pacakges: PatientLevelPrediction, DescriptiveStudies, CohortGenerator and CohortMethod