Function reference • OhdsiShinyModules

OHDSI Shiny Modules Modules for OHDSI shiny apps.
`OhdsiShinyModules-package` `OhdsiShinyModules`	OhdsiShinyModules
`getLogoImage()`	The location of the OHDSI logo
Prediction module Modules for prediction results.
`patientLevelPredictionCalibrationServer()`	The module server for exploring prediction validation results
`patientLevelPredictionCalibrationViewer()`	The module viewer for exploring prediction model calibration results
`patientLevelPredictionCovariateSummaryServer()`	The module server for exploring prediction covariate summary results
`patientLevelPredictionCovariateSummaryViewer()`	The module viewer for exploring prediction covariate summary results
`patientLevelPredictionCutoffServer()`	The module server for exploring prediction cut-off results
`patientLevelPredictionCutoffViewer()`	The module viewer for exploring prediction cut-off results
`patientLevelPredictionDesignSummaryServer()`	The module server for exploring prediction designs in the results
`patientLevelPredictionDesignSummaryViewer()`	The module viewer for exploring prediction designs that have been run
`patientLevelPredictionDiagnosticsServer()`	The module server for exploring prediction diagnostic results
`patientLevelPredictionDiagnosticsViewer()`	The module viewer for exploring prediction diagnostic results
`patientLevelPredictionDiscriminationServer()`	The module server for exploring prediction model discrimination results
`patientLevelPredictionDiscriminationViewer()`	The module viewer for exploring prediction model discrimination results
`patientLevelPredictionHelperFile()`	The location of the prediction module helper file
`patientLevelPredictionModelSummaryServer()`	The module server for exploring prediction summary results
`patientLevelPredictionModelSummaryViewer()`	The module viewer for exploring prediction summary results
`patientLevelPredictionNbServer()`	The module server for exploring prediction net-benefit results
`patientLevelPredictionNbViewer()`	The module viewer for exploring prediction net-benefit results
`patientLevelPredictionServer()`	The module server for exploring PatientLevelPrediction
`patientLevelPredictionSettingsServer()`	The module server for exploring prediction settings
`patientLevelPredictionSettingsViewer()`	The module viewer for exploring prediction settings
`patientLevelPredictionValidationServer()`	The module server for exploring prediction validation results
`patientLevelPredictionValidationViewer()`	The module viewer for exploring prediction validation results
`patientLevelPredictionViewer()`	The module viewer for exploring PatientLevelPrediction
Characterization module Modules for the characterization analyses.
`characterizationHelperFile()`	The location of the characterization module helper file
`characterizationIncidenceServer()`	The module server for exploring incidence results
`characterizationIncidenceViewer()`	The module viewer for exploring incidence results
`characterizationServer()`	The module server for exploring characterization studies
`characterizationViewer()`	The module viewer for exploring characterization studies
About module Modules for the information page.
`aboutHelperFile()`	The location of the about module helper file
`aboutServer()`	The module server for the shiny app home
`aboutViewer()`	The module viewer for the shiny app home
Cohort Generator module Modules for the cohort generator package.
`cohortGeneratorHelperFile()`	The location of the cohort-generator module helper file
`cohortGeneratorServer()`	The module server for the main cohort generator module
`cohortGeneratorViewer()`	The viewer of the main cohort generator module
Estimator module Modules for the CohortMethod, SCCS and Evidence Synthesis packages.
`cohortMethodAttritionServer()`	The module server for rendering the PLE attrition results
`cohortMethodAttritionViewer()`	The module viewer for rendering the PLE attrition results
`cohortMethodCovariateBalanceServer()`	The module server for rendering the covariate balance plot
`cohortMethodCovariateBalanceViewer()`	The module viewer for rendering the PLE covariate balance analysis
`cohortMethodKaplanMeierServer()`	The module server for rendering the Kaplan Meier curve
`cohortMethodKaplanMeierViewer()`	The module viewer for rendering the PLE Kaplan Meier curve
`cohortMethodPopulationCharacteristicsServer()`	The module server for rendering the population characteristics
`cohortMethodPopulationCharacteristicsViewer()`	The module viewer for rendering the PLE population characteristics
`cohortMethodPowerServer()`	The module server for rendering the PLE power analysis results
`cohortMethodPowerViewer()`	The module viewer for rendering the PLE power analysis
`cohortMethodPropensityModelServer()`	The module server for rendering the propensity score model
`cohortMethodPropensityModelViewer()`	The module viewer for rendering the PLE propensity score model covariates/coefficients
`cohortMethodPropensityScoreDistServer()`	The module server for rendering a PLE propensity score distribution
`cohortMethodPropensityScoreDistViewer()`	The module viewer for rendering the propensity score distribution
`cohortMethodSystematicErrorServer()`	The module server for rendering the systematic error objects
`cohortMethodSystematicErrorViewer()`	The module viewer for rendering the PLE systematic error objects
`estimationHelperFile()`	The location of the estimation module helper file
`estimationServer()`	The module server for exploring estimation studies
`estimationViewer()`	The module viewer for exploring characterization studies
Data diagnostics module Modules for the DataDiagnostics package.
`dataDiagnosticDrillServer()`	The module server for exploring prediction summary results
`dataDiagnosticDrillViewer()`	The module viewer for exploring data-diagnostic results in more detail
`dataDiagnosticHelperFile()`	The location of the data-diagnostic module helper file
`dataDiagnosticServer()`	The module server for exploring data-diagnostic
`dataDiagnosticSummaryServer()`	The module server for exploring prediction summary results
`dataDiagnosticSummaryViewer()`	The module viewer for exploring data-diagnostic summary results
`dataDiagnosticViewer()`	The module viewer for exploring data-diagnostic
Cohort Diagnostic module Modules for the CohortDiagnostics package.
`cohortCountsModule()`	Shiny module for cohort counts
`cohortCountsView()`	Cohort Counts View
`cohortDefinitionsModule()`	Cohort Definition module
`cohortDefinitionsView()`	Cohort Definitions View
`cohortDiagCharacterizationView()`	characterization
`cohortDiagnosticsHelperFile()`	The location of the description module helper file
`cohortDiagnosticsServer()`	Cohort Diagnostics Explorer main module
`cohortDiagnosticsView()`	View for cohort diagnostics module
`cohortOverlapView()`	Cohort Overlap View
`compareCohortCharacterizationView()`	compare characterization view
`conceptsInDataSourceView()`	concepts In DataSource View
`createCdDatabaseDataSource()`	Create a CD data source from a database
`databaseInformationView()`	database Information View
`getCirceRenderedExpression()`	Returns list with circe generated documentation
`getEnabledCdReports()`	Get enable cd reports from available data
`incidenceRatesView()`	incidence Rates View
`inclusionRulesView()`	inclusion Rules View
`indexEventBreakdownView()`	Index event breakdown view
`orpahanConceptsView()`	Orphan Concepts View
`timeDistributionsView()`	timeDistributions view
`visitContextView()`	Visit context module view
Cohort Diagnostics Run cohort diagnostics, deploy shiny
`cohortCountsModule()`	Shiny module for cohort counts
`cohortCountsView()`	Cohort Counts View
`cohortDefinitionsModule()`	Cohort Definition module
`cohortDefinitionsView()`	Cohort Definitions View
`cohortDiagCharacterizationView()`	characterization
`cohortDiagnosticsHelperFile()`	The location of the description module helper file
`cohortDiagnosticsServer()`	Cohort Diagnostics Explorer main module
`cohortDiagnosticsView()`	View for cohort diagnostics module
`cohortOverlapView()`	Cohort Overlap View
`compareCohortCharacterizationView()`	compare characterization view
`conceptsInDataSourceView()`	concepts In DataSource View
`createCdDatabaseDataSource()`	Create a CD data source from a database
`databaseInformationView()`	database Information View
`getCirceRenderedExpression()`	Returns list with circe generated documentation
`getEnabledCdReports()`	Get enable cd reports from available data
`incidenceRatesView()`	incidence Rates View
`inclusionRulesView()`	inclusion Rules View
`indexEventBreakdownView()`	Index event breakdown view
`orpahanConceptsView()`	Orphan Concepts View
`timeDistributionsView()`	timeDistributions view
`visitContextView()`	Visit context module view
Report module Report generating module
`reportHelperFile()`	The location of the report module helper file
`reportServer()`	The module server for the shiny app report module
`reportViewer()`	The module viewer for the shiny app report module
PheValuator module PheValuator module
`phevaluatorHelperFile()`	The location of the phevaluator module helper file
`phevaluatorServer()`	The module server for the main phevaluator module
`phevaluatorViewer()`	The viewer of the phevaluator module
Large Table Utilities for tables that contain large amounts of rows
`LargeDataTable`	Large Data Table
`createLargeSqlQueryDt()`	Create Large Sql Query Data Table
`largeTableServer()`	Large Table Component Server
`largeTableView()`	Large Table Component Viewer
Utils Shared usable utility functions
`createCustomColDefList()`	Creating a list of custom column definitions for use in reactables
`datasourcesHelperFile()`	Define the helper file for the module
`datasourcesServer()`	The server function for the datasources module
`datasourcesViewer()`	The viewer function for hte datasources module
`makeButtonLabel()`	Make a label for an html button
`resultTableServer()`	Result Table Server
`resultTableViewer()`	Result Table Viewer
Example Connection to example results database
`getExampleConnectionDetails()`	A connection details to an example result database
Home Home module functions
`homeHelperFile()`	The location of the home module helper file
`homeServer()`	The module server for exploring home
`homeViewer()`	The module viewer for exploring home

Reference

OHDSI Shiny Modules

Prediction module

Characterization module

About module

Cohort Generator module

Estimator module

Data diagnostics module

Cohort Diagnostic module

Cohort Diagnostics

Report module

PheValuator module

Large Table

Utils

Example

Home