Function reference • OhdsiShinyModules

OHDSI Shiny Modules

Modules for OHDSI shiny apps.

OhdsiShinyModules-package OhdsiShinyModules: OhdsiShinyModules

Prediction module

Modules for prediction results.

patientLevelPredictionCalibrationServer(): The module server for exploring prediction validation results

patientLevelPredictionCalibrationViewer(): The module viewer for exploring prediction model calibration results

patientLevelPredictionCovariateSummaryServer(): The module server for exploring prediction covariate summary results

patientLevelPredictionCovariateSummaryViewer(): The module viewer for exploring prediction covariate summary results

patientLevelPredictionCutoffServer(): The module server for exploring prediction cut-off results

patientLevelPredictionCutoffViewer(): The module viewer for exploring prediction cut-off results

patientLevelPredictionDesignSummaryServer(): The module server for exploring prediction designs in the results

patientLevelPredictionDesignSummaryViewer(): The module viewer for exploring prediction designs that have been run

patientLevelPredictionDiagnosticsServer(): The module server for exploring prediction diagnostic results

patientLevelPredictionDiagnosticsViewer(): The module viewer for exploring prediction diagnostic results

patientLevelPredictionDiscriminationServer(): The module server for exploring prediction model discrimination results

patientLevelPredictionDiscriminationViewer(): The module viewer for exploring prediction model discrimination results

patientLevelPredictionHelperFile(): The location of the prediction module helper file

patientLevelPredictionModelSummaryServer(): The module server for exploring prediction summary results

patientLevelPredictionModelSummaryViewer(): The module viewer for exploring prediction summary results

patientLevelPredictionNbServer(): The module server for exploring prediction net-benefit results

patientLevelPredictionNbViewer(): The module viewer for exploring prediction net-benefit results

patientLevelPredictionServer(): The module server for exploring PatientLevelPrediction

patientLevelPredictionSettingsServer(): The module server for exploring prediction settings

patientLevelPredictionSettingsViewer(): The module viewer for exploring prediction settings

patientLevelPredictionValidationServer(): The module server for exploring prediction validation results

patientLevelPredictionValidationViewer(): The module viewer for exploring prediction validation results

patientLevelPredictionViewer(): The module viewer for exploring PatientLevelPrediction

Characterization module

Modules for the characterization analyses.

characterizationHelperFile(): The location of the characterization module helper file

characterizationIncidenceServer(): The module server for exploring incidence results

characterizationIncidenceViewer(): The module viewer for exploring incidence results

characterizationServer(): The module server for exploring characterization studies

characterizationViewer(): The module viewer for exploring characterization studies

About module

Modules for the information page.

aboutHelperFile(): The location of the about module helper file

aboutServer(): The module server for the shiny app home

aboutViewer(): The module viewer for the shiny app home

Cohort Generator module

Modules for the cohort generator package.

cohortGeneratorHelperFile(): The location of the cohort-generator module helper file

cohortGeneratorServer(): The module server for the main cohort generator module

cohortGeneratorViewer(): The viewer of the main cohort generator module

Estimator module

Modules for the CohortMethod, SCCS and Evidence Synthesis packages.

cohortMethodAttritionServer(): The module server for rendering the PLE attrition results

cohortMethodAttritionViewer(): The module viewer for rendering the PLE attrition results

cohortMethodCovariateBalanceServer(): The module server for rendering the covariate balance plot

cohortMethodCovariateBalanceViewer(): The module viewer for rendering the PLE covariate balance analysis

cohortMethodKaplanMeierServer(): The module server for rendering the Kaplan Meier curve

cohortMethodKaplanMeierViewer(): The module viewer for rendering the PLE Kaplan Meier curve

cohortMethodPopulationCharacteristicsServer(): The module server for rendering the population characteristics

cohortMethodPopulationCharacteristicsViewer(): The module viewer for rendering the PLE population characteristics

cohortMethodPowerServer(): The module server for rendering the PLE power analysis results

cohortMethodPowerViewer(): The module viewer for rendering the PLE power analysis

cohortMethodPropensityModelServer(): The module server for rendering the propensity score model

cohortMethodPropensityModelViewer(): The module viewer for rendering the PLE propensity score model covariates/coefficients

cohortMethodPropensityScoreDistServer(): The module server for rendering a PLE propensity score distribution

cohortMethodPropensityScoreDistViewer(): The module viewer for rendering the propensity score distribution

cohortMethodSystematicErrorServer(): The module server for rendering the systematic error objects

cohortMethodSystematicErrorViewer(): The module viewer for rendering the PLE systematic error objects

estimationHelperFile(): The location of the estimation module helper file

estimationServer(): The module server for exploring estimation studies

estimationViewer(): The module viewer for exploring characterization studies

Data diagnostics module

Modules for the DataDiagnostics package.

dataDiagnosticDrillServer(): The module server for exploring prediction summary results

dataDiagnosticDrillViewer(): The module viewer for exploring data-diagnostic results in more detail

dataDiagnosticHelperFile(): The location of the data-diagnostic module helper file

dataDiagnosticServer(): The module server for exploring data-diagnostic

dataDiagnosticSummaryServer(): The module server for exploring prediction summary results

dataDiagnosticSummaryViewer(): The module viewer for exploring data-diagnostic summary results

dataDiagnosticViewer(): The module viewer for exploring data-diagnostic

Cohort Diagnostic module

Modules for the CohortDiagnostics package.

cohortCountsModule(): Shiny module for cohort counts

cohortCountsView(): Cohort Counts View

cohortDefinitionsModule(): Cohort Definition module

cohortDefinitionsView(): Cohort Definitions View

cohortDiagCharacterizationView(): characterization

cohortDiagnosticsHelperFile(): The location of the description module helper file

cohortDiagnosticsServer(): Cohort Diagnostics Explorer main module

cohortDiagnosticsView(): View for cohort diagnostics module

cohortOverlapView(): Cohort Overlap View

compareCohortCharacterizationView(): compare characterization view

conceptsInDataSourceView(): concepts In DataSource View

createCdDatabaseDataSource(): Create a CD data source from a database

databaseInformationView(): database Information View

getCirceRenderedExpression(): Returns list with circe generated documentation

getEnabledCdReports(): Get enable cd reports from available data

incidenceRatesView(): incidence Rates View

inclusionRulesView(): inclusion Rules View

indexEventBreakdownView(): Index event breakdown view

orpahanConceptsView(): Orphan Concepts View

timeDistributionsView(): timeDistributions view

visitContextView(): Visit context module view

Cohort Diagnostics

Run cohort diagnostics, deploy shiny

cohortCountsModule(): Shiny module for cohort counts

cohortCountsView(): Cohort Counts View

cohortDefinitionsModule(): Cohort Definition module

cohortDefinitionsView(): Cohort Definitions View

cohortDiagCharacterizationView(): characterization

cohortDiagnosticsHelperFile(): The location of the description module helper file

cohortDiagnosticsServer(): Cohort Diagnostics Explorer main module

cohortDiagnosticsView(): View for cohort diagnostics module

cohortOverlapView(): Cohort Overlap View

compareCohortCharacterizationView(): compare characterization view

conceptsInDataSourceView(): concepts In DataSource View

createCdDatabaseDataSource(): Create a CD data source from a database

databaseInformationView(): database Information View

getCirceRenderedExpression(): Returns list with circe generated documentation

getEnabledCdReports(): Get enable cd reports from available data

incidenceRatesView(): incidence Rates View

inclusionRulesView(): inclusion Rules View

indexEventBreakdownView(): Index event breakdown view

orpahanConceptsView(): Orphan Concepts View

timeDistributionsView(): timeDistributions view

visitContextView(): Visit context module view

Report module

Report generating module

reportHelperFile(): The location of the report module helper file

reportServer(): The module server for the shiny app report module

reportViewer(): The module viewer for the shiny app report module

PheValuator module

phevaluatorHelperFile(): The location of the phevaluator module helper file

phevaluatorServer(): The module server for the main phevaluator module

phevaluatorViewer(): The viewer of the phevaluator module

Large Table

Utilities for tables that contain large amounts of rows

LargeDataTable: Large Data Table

createLargeSqlQueryDt(): Create Large Sql Query Data Table

largeTableServer(): Large Table Component Server

largeTableView(): Large Table Component Viewer

Utils

Shared usable utility functions

createCustomColDefList(): Creating a list of custom column definitions for use in reactables

datasourcesHelperFile(): Define the helper file for the module

datasourcesServer(): The server function for the datasources module

datasourcesViewer(): The viewer function for hte datasources module

getLogoImage(): The location of the OHDSI logo

makeButtonLabel(): Make a label for an html button

resultTableServer(): Result Table Server

resultTableViewer(): Result Table Viewer

Example

Connection to example results database

getExampleConnectionDetails(): A connection details to an example result database

Home

Home module functions

homeHelperFile(): The location of the home module helper file

homeServer(): The module server for exploring summary html files

homeViewer(): The module viewer for exploring summary results