Summarise code use in patient-level data
Source:R/summariseConceptCounts.R
summariseConceptCounts.Rd
Summarise code use in patient-level data
Usage
summariseConceptCounts(
cdm,
conceptId,
countBy = c("record", "person"),
concept = TRUE,
year = FALSE,
sex = FALSE,
ageGroup = NULL
)
Arguments
- cdm
A cdm object
- conceptId
List of concept IDs to summarise.
- countBy
Either "record" for record-level counts or "person" for person-level counts
- concept
TRUE or FALSE. If TRUE code use will be summarised by concept.
- year
TRUE or FALSE. If TRUE code use will be summarised by year.
- sex
TRUE or FALSE. If TRUE code use will be summarised by sex.
- ageGroup
A list of ageGroup vectors of length two. Code use will be thus summarised by age groups.
Examples
# \donttest{
cdm <- mockOmopSketch()
cs <- list(sumatriptan = c(35604883, 35604879, 35604880, 35604884))
results <- summariseConceptCounts(cdm, conceptId = cs)
#> ℹ Getting use of codes from sumatriptan
results
#> # A tibble: 10 × 13
#> result_id cdm_name group_name group_level strata_name strata_level
#> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 2 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 3 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 4 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 5 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 6 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 7 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 8 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 9 1 mockOmopSketch codelist_name sumatriptan overall overall
#> 10 1 mockOmopSketch codelist_name sumatriptan overall overall
#> # ℹ 7 more variables: variable_name <chr>, variable_level <chr>,
#> # estimate_name <chr>, estimate_type <chr>, estimate_value <chr>,
#> # additional_name <chr>, additional_level <chr>
PatientProfiles::mockDisconnect(cdm)
# }