OmopSketch 1.1.0
CRAN release: 2026-06-16
- speed up summariseClinicalRecords by @edward-burn in #562
- include delphi by @catalamarti in #574
- add badges in readme by @catalamarti in #575
- Add record duration summary and end-date checks by @cecicampanile in #576
- Add location and provider counts to summarisePerson if less than 15 labels by @catalamarti in #583
- only subjects in person table used in analyses and fixed percentages … by @cecicampanile in #573
- Include standard_vocabulary in summariseClinicalTable by @cecicampanile in #580
- Update plotPerson with all variables by @cecicampanile in #595
- add if column is required in the summariseMissingData by @cecicampanile in #594
- Set legend labels in plotPerson by @cecicampanile in #591
- cumulative plot if density results are available by @cecicampanile in #597
- add standard and source vocabularies to summariseConceptIdCounts by @cecicampanile in #589
- update readme by @cecicampanile in #596
- include type concept id in summariseClinicalRecords by @cecicampanile in #590
- Add ‘end date’ trends in summariseTrend by @cecicampanile in #598
- update documentation by @cecicampanile in #599
- drop temp tables if error occurs by @cecicampanile in #601
OmopSketch 1.0.1
CRAN release: 2026-02-06
- Remove deprecated internal functions and add tests by @catalamarti in #525
- Update deprecated function tests for specific DB by @catalamarti in #532
- summarieClinicalRecords to work with all clinical tables by @cecicampanile in #533
- update tables and test tables by @cecicampanile in #535
- Improve tableConceptIdCounts.R by @cecicampanile in #538
- dont test database characteristics with age group when cdm is local by @cecicampanile in #540
- plot functions updated by @cecicampanile in #534
- fix integer overflow in sql server by @cecicampanile in #542
- attempt fix for bigint concept count by @edward-burn in #543
- without grouping by @edward-burn in #548
- Update tablePerson.R by @cecicampanile in #550
- separate standard, non standard and 0 in summariseClinicalRecords by @cecicampanile in #547
- Print big int by @cecicampanile in #553
- hide, header and group arguments in tables by @cecicampanile in #551
OmopSketch 1.0.0
CRAN release: 2025-11-19
- Characterise all mock datasets by @catalamarti #430
- background in shiny by @cecicampanile #431
- shiny name shiny -> OmopSketchShiny by @catalamarti #432
- fix plot of characterisation of population in shiny by @cecicampanile #437
- new function: summariseTrend by @cecicampanile #433
- add cdm_source in summariseOmopSnapshot by @catalamarti #438
- new function: summarisePerson by @catalamarti #440
- summariseObservationPeriod 1.0.0 by @cecicampanile #446
- summariseClinicalRecords 1.0 by @cecicampanile #443
- missingness in shiny characteristics by @cecicampanile #450
- sql translations by @catalamarti #449
- style argument in table and plot functions by @cecicampanile #451
- Fix: Ensure database compatibility for boolean aggregations in summariseNumeric2 by @merqurio #457
- Fix documentation for plotObservationPeriod by @cecicampanile #460
- tableObservationPeriod when byOrder = FALSE by @cecicampanile #459
- summariseObservationPeriod minor fix by @cecicampanile #463
- check for person id not in person table in summariseClinicalRecords by @cecicampanile #461
- fix some test failures by @cecicampanile #469
- In observation argument by @cecicampanile #470
- update shinyCharacteristics #454
- sample to work on the person level by @cecicampanile #458
- tableConceptIdCounts update by @cecicampanile #476
- captions in tables by @cecicampanile #477
- summarisePerson in databaseCharacteristics and shinyCharacteristics by @cecicampanile #478
- Reduce imports by @catalamarti #503
- Remove :: from vignettes, readme and examples by @catalamarti #502
- Use default of style and type = NULL by @catalamarti #498
- Tidy vignettes by @catalamarti i#508
- Tidy documentation by @catalamarti #510
- refine readme by @catalamarti #505
- scarlet brand in shiny by @cecicampanile #513
- Test multiple dbms by @catalamarti #514
- add logo to shiny by @catalamarti #516
- reduce size of tables before collecting in summariseTrend by @cecicampanile #518
OmopSketch 0.5.1
CRAN release: 2025-06-19
- removed overall results when plotting trends by @cecicampanile #418
OmopSketch 0.5.0
CRAN release: 2025-06-18
Table top concept counts by @cecicampanile @catalamarti #392
summariseTableQuality function by @cecicampanile #396
specify arguments in examples and deprecate summariseConceptSetCounts by @cecicampanile #397
In summariseObservationPeriod age computed after trimming to the study period by @cecicampanile #403
summariseInObservation refactoring by @cecicampanile #390
fixed warnings in tests by @cecicampanile #399shinyCharacteristics() function by @cecicampanile #401
observation period functions to work with temp tables by @cecicampanile #400
eunomia vocabulary in mockOmopSketch.R by @cecicampanile #398
tableQuality() function by @cecicampanile #406
summariseTableQuality in databaseCharacteristics() by @cecicampanile #407
use shinyCharacteristics() to generate the shiny deployed in the website by @cecicampanile #415
Improve tableClinicalRecords.R by @cecicampanile #417
Documentation by @cecicampanile #416
OmopSketch 0.4.0
CRAN release: 2025-05-15
“sex” and “age” output in summariseInObservation by @cecicampanile #358
source concept in summariseConceptIdCount and tableConceptIdCounts by @cecicampanile #362t
ableInObservation and tableRecordCount by @cecicampanile #363
databaseCharacteristics() function by @cecicampanile #330
Table Record Count and In Observation by @cecicampanile #363
Add new examples by @elinrow #376Vignette explaining missing data functions by @elinrow #375
Update “Summarise observation period” vignette by @cecicampanile #377
Update “Summarise clinical tables records” by @cecicampanile #378
Create shiny app with characterisation of synthetic data by @catalamarti #381
“Summarise concept count” vignette by @cecicampanile #379
Update vocabulary version in summariseOmopSnapshot() by @cecicampanile #383
OmopSketch 0.3.2
CRAN release: 2025-04-14
- remove dplyr::compute() from sampleOmopTable() by @cecicampanile #344
- option to summarise by person in summariseInObservation by @cecicampanile #345
- counts of 0 in summariseMissingData by @cecicampanile #346
- x ax ordered by observation period ordinal in plotObservationPeriod by @cecicampanile #348
- byOrdinal boolean argument in summariseObservationPeriod by @cecicampanile #349
- bug that was showing percentages over 100 fixed in summariseClinicalRecords by @cecicampanile #350
OmopSketch 0.3.1
CRAN release: 2025-03-16
- remove dplyr::collect() from summariseClinicalRecords() by @cecicampanile #328
- bug with time_interval fixed in summariseMissingData() by @cecicampanile #335
- improved tableConceptIdCounts by @cecicampanile #336
- arranged variable_name and variable_level in tableClinicalRecords by @cecicampanile #337
OmopSketch 0.3.0
CRAN release: 2025-03-04
- eunomiaIsAvailable instead of the deprecated eunomia_is_available by @cecicampanile #316
- Account for int64 in summariseInObservation by @cecicampanile #312
- Add “datatable” as possible table type by @cecicampanile #314
- Interval argument in summariseMissingData and summariseConceptIdCounts, year argument deprecated by @cecicampanile #317
- Only records in observation are accounted in summariseConceptIdCounts and summariseConceptSetCounts by @cecicampanile #319
- vignette with full characterisation and shiny by @cecicampanile #325
- in summariseInObservation and summariseObservationPeriod study range is now applied with cohortConstructor::trimToDateRange instead of requireInDateRange by @cecicampanile #325