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Create a visual table from a summariseMissingData() result.

Source: R/tableMissingData.R
tableMissingData.Rd

Create a visual table from a summariseMissingData() result.

Usage

tableMissingData(result, type = "gt", style = "default")

Arguments

result

A summarised_result object.

type

Type of formatting output table. See visOmopResults::tableType() for allowed options. Default is "gt".

style

Named list that specifies how to style the different parts of the gt or flextable table generated. Accepted style entries are: title, subtitle, header, header_name, header_level, column_name, group_label, and body. Alternatively, use "default" to get visOmopResults style, or NULL for gt/flextable style. Keep in mind that styling code is different for gt and flextable. Additionally, "datatable" and "reactable" have their own style functions. To see style options for each table type use visOmopResults::tableStyle()

Value

A formatted table object with the summarised data.

Examples

# \donttest{
library(OmopSketch)
cdm <- mockOmopSketch(numberIndividuals = 100)

result <- summariseMissingData(
  cdm = cdm,
  omopTableName = c("condition_occurrence", "visit_occurrence")
)
#> The person table has ≤ 1e+05 subjects; skipping sampling of the CDM.
#> The person table has ≤ 1e+05 subjects; skipping sampling of the CDM.

tableMissingData(result = result)



  
Column name
      Estimate name
      
        
Database name

      		
    
mockOmopSketch
    
visit_occurrence
    
admitting_source_concept_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
admitting_source_value
N missing data (%)
34,568 (100.00%)
care_site_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
discharge_to_concept_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
discharge_to_source_value
N missing data (%)
34,568 (100.00%)
person_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
preceding_visit_occurrence_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
provider_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
visit_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
visit_end_date
N missing data (%)
0 (0.00%)
visit_end_datetime
N missing data (%)
34,568 (100.00%)
visit_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
visit_source_concept_id
N missing data (%)
34,568 (100.00%)

N zeros (%)
0 (0.00%)
visit_source_value
N missing data (%)
34,568 (100.00%)
visit_start_date
N missing data (%)
0 (0.00%)
visit_start_datetime
N missing data (%)
34,568 (100.00%)
visit_type_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_occurrence
    
condition_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_end_date
N missing data (%)
0 (0.00%)
condition_end_datetime
N missing data (%)
8,400 (100.00%)
condition_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_source_concept_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
condition_source_value
N missing data (%)
8,400 (100.00%)
condition_start_date
N missing data (%)
0 (0.00%)
condition_start_datetime
N missing data (%)
8,400 (100.00%)
condition_status_concept_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
condition_status_source_value
N missing data (%)
8,400 (100.00%)
condition_type_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
person_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
provider_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
stop_reason
N missing data (%)
8,400 (100.00%)
visit_detail_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
visit_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)

CDMConnector::cdmDisconnect(cdm = cdm)
# }