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Create a visual table from a summariseMissingData() result.

Source: R/tableMissingData.R
tableMissingData.Rd

Create a visual table from a summariseMissingData() result.

Usage

tableMissingData(result, type = "gt")

Arguments

result

A summarised_result object.

type

Type of formatting output table. See visOmopResults::tableType() for allowed options. Default is "gt".

Value

A formatted table object with the summarised data.

Examples

# \donttest{
cdm <- mockOmopSketch(numberIndividuals = 100)

result <- summariseMissingData(cdm = cdm,
omopTableName = c("condition_occurrence", "visit_occurrence"))

tableMissingData(result = result)



  
Column name
      Estimate name
      
        
Database name

      		
    
mockOmopSketch
    
condition_occurrence
    
condition_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
person_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_start_date
N missing data (%)
0 (0.00%)
condition_start_datetime
N missing data (%)
8,400 (100.00%)
condition_end_date
N missing data (%)
0 (0.00%)
condition_end_datetime
N missing data (%)
8,400 (100.00%)
condition_type_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
condition_status_concept_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
stop_reason
N missing data (%)
8,400 (100.00%)
provider_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
visit_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
visit_detail_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
condition_source_value
N missing data (%)
8,400 (100.00%)
condition_source_concept_id
N missing data (%)
8,400 (100.00%)

N zeros (%)
0 (0.00%)
condition_status_source_value
N missing data (%)
8,400 (100.00%)
visit_occurrence
    
visit_occurrence_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
person_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
visit_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
visit_start_date
N missing data (%)
0 (0.00%)
visit_start_datetime
N missing data (%)
35,756 (100.00%)
visit_end_date
N missing data (%)
0 (0.00%)
visit_end_datetime
N missing data (%)
35,756 (100.00%)
visit_type_concept_id
N missing data (%)
0 (0.00%)

N zeros (%)
0 (0.00%)
provider_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)
care_site_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)
visit_source_value
N missing data (%)
35,756 (100.00%)
visit_source_concept_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)
admitting_source_concept_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)
admitting_source_value
N missing data (%)
35,756 (100.00%)
discharge_to_concept_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)
discharge_to_source_value
N missing data (%)
35,756 (100.00%)
preceding_visit_occurrence_id
N missing data (%)
35,756 (100.00%)

N zeros (%)
0 (0.00%)

PatientProfiles::mockDisconnect(cdm = cdm)
# }