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Create a visual table from a summariseObservationPeriod() result.

Source: R/tableObservationPeriod.R
tableObservationPeriod.Rd

Create a visual table from a summariseObservationPeriod() result.

Usage

tableObservationPeriod(result, type = "gt", style = "default")

Arguments

result

A summarised_result object.

type

Type of formatting output table. See visOmopResults::tableType() for allowed options. Default is "gt".

style

Named list that specifies how to style the different parts of the gt or flextable table generated. Accepted style entries are: title, subtitle, header, header_name, header_level, column_name, group_label, and body. Alternatively, use "default" to get visOmopResults style, or NULL for gt/flextable style. Keep in mind that styling code is different for gt and flextable. Additionally, "datatable" and "reactable" have their own style functions. To see style options for each table type use visOmopResults::tableStyle()

Value

A formatted table object with the summarised data.

Examples

# \donttest{
library(OmopSketch)

cdm <- mockOmopSketch(numberIndividuals = 100)

result <- summariseObservationPeriod(observationPeriod = cdm$observation_period)
#> ℹ retrieving cdm object from cdm_table.
#> Warning: These columns contain missing values, which are not permitted:
#> "period_type_concept_id"

tableObservationPeriod(result = result)



  
Observation period ordinal
      Variable name
      Variable level
      Estimate name
      
        
CDM name

      		
    
mockOmopSketch
    
all
Records per person
-
mean (sd)
1.00 (0.00)



median [Q25 - Q75]
1 [1 - 1]

Duration in days
-
mean (sd)
4,013.18 (4,033.02)



median [Q25 - Q75]
2,950 [1,276 - 5,222]

Number records
-
N
100

Number subjects
-
N
100

Type concept id
Unknown type concept: NA
N (%)
100 (100.00%)

Subjects not in person table
-
N (%)
0 (0.00%)

End date before start date
-
N (%)
0 (0.00%)

Start date before birth date
-
N (%)
0 (0.00%)

Column name
observation_period_id
N missing data (%)
0 (0.00%)



N zeros (%)
0 (0.00%)


person_id
N missing data (%)
0 (0.00%)



N zeros (%)
0 (0.00%)


observation_period_start_date
N missing data (%)
0 (0.00%)


observation_period_end_date
N missing data (%)
0 (0.00%)


period_type_concept_id
N missing data (%)
100 (100.00%)



N zeros (%)
0 (0.00%)
1st
Duration in days
-
mean (sd)
4,013.18 (4,033.02)



median [Q25 - Q75]
2,950 [1,276 - 5,222]

Number subjects
-
N
100

PatientProfiles::mockDisconnect(cdm = cdm)
# }