PhenotypeLibrary
3.34.0
- Reference
-
Articles
- Cohort Definitions in OHDSI Phenotype Library
- Cohort Definition Submission Requirements
- Concept Set Definitions in OHDSI Phenotype Library
- Guidance on writing clinical description for Condition Phenotypes
- Guidance on Cohort Definition Set R Object
- Guidance on literature review
- Guidance on performing peer review
- Guidance on writing an evaluation report
- Guidance on writing Cohort Definition Logic Description
- How to Use PhenotypeLibrary R Package
- Reserved Words With Special Meaning To Phenotypers
- Submitted Cohort Definitions
- Validity checks for Cohort Definitions
- Changelog
Concept Set Definitions in OHDSI Phenotype Library
Gowtham A. Rao
2024-10-02
Source:vignettes/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.Rmd
ConceptSetDefinitionsInOhdsiPhenotypeLibrary.RmdUnique Concept Set Id
Cohort Id
Concept Set Id
Concept Set Name
Concept Set Used In Entry Event
Concept Set Used In Entry Event To Query Source
Has Standard
Has Non Standard
Has Valid
Has Invalid
Has Condition
Count Condition
Has Procedure
Count Procedure
Has Device
Count Device
Has Drug
Count Drug
Has Observation
Count Observation
Has Visit
Count Visit
Has Type
Count Type
Is Selected Include Mapped
Is Selected Include Descendants
Is Selected Is Excluded
Is Not Selected Include Mapped
Is Not Selected Include Descendants
Is Not Selected Is Excluded
Rows In Concept Set Expression
Number Of Unique Concept Ids
Number Of Unique Concept Ids Without Descendants
Number Of Unique Concept Ids Wit Descendants
Number Of Unique Concept Id Is Standard
Number Of Unique Concept Id Is Non Standard
1
56
4
COVID-19
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
1
84
4
COVID-19
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
2
56
5
SARS-CoV-2 test
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
4
4
0
4
4
0
2
84
5
SARS-CoV-2 test
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
4
4
0
4
4
0
3
3
1
Cough or Suptum Finding
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
3
64
3
Cough
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
4
4
1
Diarrhea
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
5
5
0
Dyspnea
1
1
1
0
1
0
1
3
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
3
3
0
3
3
0
5
64
6
Dyspnea
1
1
1
0
1
0
1
3
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
3
3
0
3
3
0
6
6
1
Fever (38.0°C or higher) pre-coordinated measurement and conditions
1
1
1
0
1
0
1
42
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
46
45
0
45
45
0
7
6
2
Fever (38.0°C or higher) measurement and observation
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
8
0
0
0
0
0
1
1
0
1
0
45
45
0
45
45
0
7
64
2
Fever (38.0°C or higher) measurement and observation
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
8
0
0
0
0
0
1
1
0
1
0
45
45
0
45
45
0
7
208
2
Fever (38.0°C or higher) measurement and observation
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
8
0
0
0
0
0
1
1
0
1
0
45
45
0
45
45
0
7
737
2
Fever (38.0°C or higher) measurement and observation
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
8
0
0
0
0
0
1
1
0
1
0
45
45
0
45
45
0
8
7
8
Headache including migraine and neurologic pain
1
1
1
0
1
0
1
4
0
0
0
0
0
0
1
2
0
0
0
0
0
1
1
0
1
0
6
6
0
6
6
0
9
8
0
Altered Smell or Taste
1
1
1
0
1
0
1
5
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
5
5
0
5
5
0
10
9
3
Sore throat
1
1
1
0
1
0
1
13
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
14
14
0
14
14
0
11
10
3
Nausea or Vomiting
1
1
1
0
1
0
1
4
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
5
5
0
5
5
0
12
11
3
Malaise or Fatigue or (Malaise and Fatigue)
1
1
1
0
1
0
1
15
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
15
15
0
15
15
0
13
12
1
Rhinitis or Common cold or Sinusitis
1
1
1
0
1
0
1
3
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
3
3
0
3
3
0
14
13
2
Myalgia Muscle Pain
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
2
2
1
1
2
0
14
14
2
Myalgia
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
2
2
1
1
2
0
15
13
3
Secondary explanations for Muscle pain explained by injury, ischemia or systemic inflammation
0
0
1
0
1
0
1
9
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
9
9
0
9
9
0
20
20
2
Bronchitis or Bronchiolitis
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
21
21
3
Acute respiratory distress syndrome (ARDS) or Acute Respiratory Failure
1
1
1
0
1
0
1
4
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
4
4
0
4
4
0
22
23
4
Inpatient Visit
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
61
2
Inpatient Visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
78
3
Inpatient Visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
79
4
Inpatient Visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
80
4
Inpatient Visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
82
4
Inpatient Visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
218
3
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
233
2
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
234
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
235
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
248
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
249
2
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
255
9
Inpatient or ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
325
4
Inpatient Visit
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
344
3
Inpatient
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
346
3
Inpatient
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
694
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
707
4
Inpatient Visit
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1021
2
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1079
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1080
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1081
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1084
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1085
1
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1087
2
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
22
1089
2
Inpatient or Inpatient/ER visit
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
2
0
0
0
1
0
0
1
0
2
2
0
2
2
0
23
24
0
Emergency room
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
1
0
1
1
0
1
1
0
23
257
0
Emergency room
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
1
0
1
1
0
1
1
0
23
344
4
Emergency Room
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
1
0
1
1
0
1
1
0
23
346
4
Emergency Room
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
1
0
1
1
0
1
1
0
24
27
0
Asthma
1
1
1
0
1
0
1
2
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
3
3
0
3
3
0
24
334
0
Asthma
1
1
1
0
1
0
1
2
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
3
3
0
3
3
0
24
1262
3
Asthma
1
1
1
0
1
0
1
2
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
3
3
0
3
3
0
24
1263
3
Asthma
0
0
1
0
1
0
1
2
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
3
3
0
3
3
0
25
27
2
Chronic Obstructive Lung Disease
0
0
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
25
1262
0
Chronic obstructive lung disease
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
25
1263
0
Chronic obstructive lung disease
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
25
1271
0
Chronic obstructive lung disease
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
26
27
3
Long-acting muscarinic antagonists (LAMAs)
0
0
0
1
1
0
0
0
0
0
0
0
1
1
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
0
1
27
27
4
Asthma therapy
1
1
1
1
1
0
0
0
0
0
0
0
1
119
0
0
0
0
0
0
0
1
0
0
1
0
119
119
0
119
118
1
27
334
4
Asthma therapy
1
1
1
1
1
0
0
0
0
0
0
0
1
119
0
0
0
0
0
0
0
1
0
0
1
0
119
119
0
119
118
1
46
30
6
All TB drugs
0
0
1
0
1
0
0
0
0
0
0
0
1
24
0
0
0
0
0
0
0
1
0
0
1
0
24
24
0
24
24
0
47
30
7
Respiratory and pulmonary tuberculosis
1
1
1
0
1
0
1
6
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
6
6
1
5
6
0
47
43
7
Respiratory or pulmonary tuberculosis
1
1
1
0
1
0
1
6
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
6
6
1
5
6
0
48
31
3
Malignant neoplasms excluding non-melanoma skin cancer
1
1
1
0
1
0
1
3
0
0
0
0
0
0
1
2
0
0
0
0
0
1
1
0
1
0
5
5
0
5
5
0
49
32
0
BMI measurement
1
1
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
49
1056
6
[PL] BMI measurement
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
50
32
1
Obesity diagnoses
1
1
1
0
1
0
1
1
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
50
1056
5
[PL] Obesity diagnoses
0
0
1
0
1
0
1
1
0
0
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
51
32
2
Body weight
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
2
0
0
0
0
0
1
1
0
1
0
6
6
0
6
6
0
51
1056
7
[PL] Body weight
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
6
6
0
6
6
0
52
33
0
Dementia
1
1
1
0
1
0
1
20
0
0
0
0
0
0
1
1
0
0
0
0
0
1
1
0
0
0
21
21
6
15
21
0
52
255
2
Dementia
1
1
1
0
1
0
1
20
0
0
0
0
0
0
1
1
0
0
0
0
0
1
1
0
0
0
21
21
6
15
21
0
53
34
0
Hypertensive disorder or hypertensive complication
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
55
79
5
Dialysis
1
1
1
1
1
0
1
1
1
2
0
0
0
0
1
1
0
0
0
0
0
1
0
0
1
0
5
5
0
5
4
1
56
36
13
HIV excluding HIV-II
1
1
1
0
1
0
1
3
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
5
5
0
5
5
0
56
1033
13
HIV excluding HIV-II
1
1
1
0
1
0
1
5
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
5
5
0
5
5
0
57
36
15
HIV drugs
0
0
1
0
1
0
0
0
0
0
0
0
1
32
0
0
0
0
0
0
0
1
0
0
1
0
32
32
0
32
32
0
57
1033
15
HIV drugs
0
0
1
0
1
0
0
0
0
0
0
0
1
32
0
0
0
0
0
0
0
1
0
0
1
0
32
32
0
32
32
0
58
36
16
HIV negative
0
0
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
59
37
5
Hepatitis C including carrier and antibody test positivity
1
1
1
0
1
0
1
6
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
6
6
0
6
6
0
60
38
5
Heart disease conditions
1
1
1
0
1
0
1
2
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
2
2
0
2
2
0
62
40
0
Type 2 Diabetes Mellitus
1
1
1
0
1
0
1
7
0
0
0
0
0
0
0
0
0
0
0
0
0
1
1
0
1
0
7
7
0
7
7
0
63
40
1
History of diabetes
1
1
1
0
1
0
0
0
0
0
0
0
0
0
1
4
0
0
0
0
0
1
0
0
1
0
4
4
0
4
4
0
64
54
4
Febrile seizure and unspecified seizure
1
1
1
0
1
0
1
3
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
3
3
1
2
3
0
65
54
6
Febrile seizure
0
0
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
67
61
0
Pacemaker
1
1
1
0
1
0
0
0
1
4
1
6
0
0
0
0
0
0
0
0
0
1
0
0
1
0
10
10
0
10
10
0
68
61
1
Bradycardia or heart block
1
1
1
0
1
0
1
4
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
4
4
1
3
4
0
70
63
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
287
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
296
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
412
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
691
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
692
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
70
1086
4
Transverse Myelitis
1
1
1
0
1
0
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
1
0
1
1
0
1
1
0
1–100 of 2123 rows
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