Upload results to the database server.

Requires the results data model tables have been created using the createResultsDataModel function.

uploadResults(
  connectionDetails,
  schema,
  resultsFolder,
  forceOverWriteOfSpecifications = FALSE,
  purgeSiteDataBeforeUploading = FALSE,
  tablePrefix = "",
  ...
)

Arguments

connectionDetails

An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package.

schema

The schema on the server where the tables have been created.

resultsFolder

Path to result files

forceOverWriteOfSpecifications

If TRUE, specifications of the phenotypes, cohort definitions, and analysis will be overwritten if they already exist on the database. Only use this if these specifications have changed since the last upload.

purgeSiteDataBeforeUploading

If TRUE, before inserting data for a specific databaseId all the data for that site will be dropped. This assumes the input zip file contains the full data for that data site.

tablePrefix

(Optional) string to insert before table names for database table names

...

See ResultModelManager::uploadResults

Value

Invisibly returns NULL. Uploads results to the database as a side effect.

Examples

if (FALSE) { # \dontrun{
uploadResults(
  connectionDetails = connectionDetails,
  schema = "results",
  resultsFolder = "./output"
)
} # }