Package index • gaiaCore

Connect

createGaiaConnectionDetails(): Connection details for a Gaia database
connectGaia(): Connect to a Gaia database
disconnectGaia(): Disconnect from a Gaia database

Catalog and ingestion

ingestDatasource(): Ingest a dataset registered in the Gaia catalog
loadVariables(): Build the geometry and attribute tables of an ingested dataset
listDatasources(): Datasets registered in the database
listVariables(): Variables registered in the attribute index

Locations

loadLocationsFromOmop(): Load person locations from an OMOP CDM with the Gaia extension
loadLocations(): Load person locations from data frames
validateLocations(): Validate the loaded locations

Exposure

spatialJoin(): Derive exposures with Gaia's spatial-temporal join
spatialJoinAll(): Derive exposures for every variable of a dataset
summarizeExposure(): Summarise the derived exposure rows
getExposure(): Fetch derived exposure rows
clearExposure(): Remove derived exposure rows
copyExposureToOmop(): Copy derived exposure into an OMOP CDM

Quality

checkExposure(): Quality checks on the derived exposure rows
checkStagedExposure(): Quality checks on staged exposure rows

Analytics

dayWeightedExposure(): Day-weighted exposure over windows
fitExposureEffect(): Effect of an exposure on a binary outcome, with intervals that hold up with few clusters