Reference

All functions

addDefaultEthnicityLineItems()

Convenience function to add default ethnicity line items

addDefaultGenderLineItems()

Convenience function to add male and female line items for demographic characterization

adherentPresenceStat()

Adherent Presence Stat

age10yrGrp()

Create a breaks Strategy object for age into 10 year groups

age5yrGrp()

Create a breaks Strategy object for age into 5 year groups

ageCharBreaks()

Create a age statistic with breaks

ageCharCts()

Create a age statistic as continuous

anyCountBreaksStat()

Any Count with Breaks

anyCountCtsStat()

Any Count Continuous

anyPresenceStat()

Any Presence Stat

anyScore()

Any Score

Breaks

Breaks Statistic

BreaksStrategy

BreaksStrategy

BuildOptions

BuildOptions

cohortFollowupTime()

Create a cohort follow up time characteristic

CohortInfo

CohortInfoe

CohortLineItem

CohortLineItem

ConceptSetGroupLineItem

ConceptSetGroupLineItem

ConceptSetLineItem

ConceptSetLineItem

ContinuousDistribution

Continuous Distribution Statistic

createCohortInfo()

Create a CohortInfo object for a cohort and set its attributes

createCohortLineItem()

Create a cohort line item and set its attributes

createCohortLineItemBatch()

Create a batch of cohort line items from a list of CohortInfo objects.

createConceptSetGroupLineItem()

Create a concept set group item and set its attributes

createConceptSetLineItem()

Create a concept set line item and set its attributes

createConceptSetLineItemBatch()

Create a batch of concept set line items from a list of Capr concept sets.

createDemographicLineItem()

Create a demographic line item and set its attributes

createExecutionSettings()

Create an ExecutionSettings object and set its attributes

createSourceConceptSetLineItem()

Create a source concept set line item and set its attributes

createSourceConceptSetLineItemBatch()

Create a batch of source concept set line items from a list of SourceConceptSet classes.

createTableShell()

Create Table Shell

defaultTableShellBuildOptions()

Default build options to generate table shell

defaultYearGrp()

Create a breaks Strategy object for year

DemographicAge

Demographic Age Statistic

DemographicCohortTime

Demographic Cohort Time Statistic

DemographicConcept

Demographic Concept Statistic

DemographicIndexYear

Demographic Index Year Statistic

DemographicLineItem

DemographicLineItem

DemographicLocation

Demographic Location Statistic

DemographicPayerType

Demographic Payer Statistic

DemographicRace

Demographic Race Statistic

ExecutionSettings

ExecutionSettings

femaleGender()

Create a female concept stat

generateTableShell()

Function to generate results for the table shell object

indexYear()

Create an index year characteristic

IntervalRate

Interval Rate Statistic

LineItem

LineItem

lineItems()

Combine all lineItems to enter into the tableShell slot

lookupSourceConcepts()

Function to look up source concepts in the OMOP Vocabulary

maleGender()

Create a male concept stat

monthlyRate()

Create a monthly interval rate statistic

newConceptBreaks()

Create a breaks Strategy object for categorizing concepts

newValueBreaks()

Create a breaks Strategy object for categorizing value

observedCountBreaksStat()

Observed Count with Breaks

observedCountCtsStat()

Observed Count Continuous

observedPresenceStat()

Observed Presence Stat

parseCohortInfoFromDf()

Parse cohort info from a data frame

payerType()

Create a payer type characteristic

personLocation()

Create a location characteristic

Presence

Presence Statistic

quanCharlsonComorbidityScore()

Convenience function to add quan charlson comorbidity score

raceCategory()

Create a race characteristic

reviewTableShellSql()

Function that previews sql script used to generate results for table shell

saveTableShellResults()

Function that previews sql script used to generate results for table shell

Score

Score Statistic

sourceConceptSet()

Function to create a source concept set

SourceConceptSetLineItem

SourceConceptSetLineItem

Statistic

An R6 class to define a Statistic object

TableShell

Table Shell

timeInterval()

Create a single time interval

TimeIntervalClass

TimeIntervalClass

timeToFirst()

Time To First

yearlyRate()

Create a yearly interval rate statistic