Cohort TablesFunctions that support creating the necessary cohort tables. |
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Create cohort tables |
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Used to get a list of cohort table names to use when creating the cohort tables |
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Cohort Defintion SetFunctions that support working with a cohort definition set |
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Save the cohort definition set to the file system |
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Get a cohort definition set |
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Create an empty cohort definition set |
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Check if a cohort definition set is using the proper data types |
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Is the data.frame a cohort definition set? |
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Cohort GenerationFunctions that support generating cohorts. |
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Generate a set of cohorts |
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Create an empty cohort definition set |
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Cohort CountsFunction for obtaining the counts of subjects and events for one or more cohorts |
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Count the cohort(s) |
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Cohort SubsetFunctions and R6 classes for creating cohort subset definitions and subset operators. |
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Add cohort subset definition to a cohort definition set |
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Cohort Subset Definition |
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Cohort Subset Operator |
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A definition of subset functions to be applied to a set of cohorts |
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Create Subset Definition |
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Create createDemographicSubset Subset |
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Create Limit Subset |
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A definition of subset functions to be applied to a set of cohorts |
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Criteria Subset |
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Get cohort subset definitions from a cohort definition set |
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Limit Subset Operator |
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Save cohort subset definitions to json |
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to List |
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SubsetOperator |
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Cohort StatisticsFunctions for inserting inclusion rule names from a cohort definition, exporting the cohort statistics to the file system and a helper function for dropping those tables when they are no longer needed. |
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Get Cohort Inclusion Stats Table Data |
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Used to insert the inclusion rule names from a cohort definition set when generating cohorts that include cohort statistics |
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Export the cohort statistics tables to the file system |
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Drop cohort statistics tables |
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Negative Control OutcomesFunctions for creating negative control outcome cohorts for use in population-level estimation. |
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Create an empty negative control outcome cohort set |
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Generate a set of negative control outcome cohorts |
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CSV File HelpersFunctions for reading and writing CSV files to ensure adherance to the HADES standard when interfacing between R and SQL/File System: https://ohdsi.github.io/Hades/codeStyle.html#Interfacing_between_R_and_SQL |
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Used to read a .csv file |
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Used to write a .csv file |
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Used to check if a string is in lower camel case |
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Used to check if a string is in snake case |
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Is the data.frame formatted for uploading to a database? |
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Record KeepingFunctions that support record keeping of tasks performed. CohortGenerator uses these functions when running in incremental mode to only generate cohorts when their definition has changed from a previous run. |
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Get a list of tasks required when running in incremental mode |
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Record a task as complete |
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Is a task required when running in incremental mode |
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Used in incremental mode to save values to a file |
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Computes the checksum for a value |