A function to extract the outcomes found in incidence

A function to extract the outcomes found in incidence

Usage

getOutcomesUsedInIncidence(
  connectionHandler,
  schema,
  ciTablePrefix = "ci_",
  cgTablePrefix = "cg_",
  targetId = NULL,
  parentId = NULL
)

Arguments

connectionHandler

A connection handler that connects to the database and extracts sql queries. Create a connection handler via `ResultModelManager::ConnectionHandler$new()`.

schema

The result database schema (e.g., 'main' for sqlite)

ciTablePrefix

The prefix used for the cohort incidence results tables

cgTablePrefix

The prefix used for the cohort generator results tables

targetId

An integer corresponding to the target cohort ID

parentId

the parent target cohort Id to extract outcomes for

Value

A data.frame with the incidence outcome cohort ids and names

Details

Specify the connectionHandler, the schema and the prefixes

See also

Other Characterization: characterizationCompareBinary(), characterizationCompareContinuous(), getBinaryCaseSeries(), getBinaryRiskFactors(), getBinaryTargetBaseline(), getCaseCounts(), getCharacterizationCaseSettings(), getCharacterizationDemographics(), getCharacterizationTargetSettings(), getContinuousCaseSeries(), getContinuousRiskFactors(), getContinuousTargetBaseline(), getDechallengeRechallenge(), getDechallengeRechallengeFails(), getIncidenceRates(), getIncidenceTargetSettings(), getNonCaseCounts(), getOutcomesUsedInCharacterization(), getTargetCounts(), getTargetsUsedInCharacterization(), getTargetsUsedInIncidence(), getTimeToEvent(), plotAgeDistributions(), plotSexDistributions(), viewIncidenceRate()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)
#> Connecting using SQLite driver

outcomes <- getOutcomesUsedInIncidence(
  connectionHandler = connectionHandler, 
  schema = 'main'
)