All functions

addGitRemoteToUlysses()

Function to add a Remote to Ulysses directory

buildStudyHub()

Build Study Hub

cloneUlysses()

Function to clone a Ulysses Repo into local

createExecutionSettings()

Create an ExecutionSettings object and set its attributes

defineLoadTable()

Define the load table

execStudyPipeline()

Function to execute all study task in analysis folder on set of configBlock

execStudyTask()

Function to execute a study task in Ulysses

ExecutionSettings

ExecutionSettings

importAtlasCohortsFromManifest()

Import Atlas Cohorts from the manifest

importAtlasConceptSetsFromManifest()

Import Atlas Concept sets from the manifest

initializeManifest()

Initialize Manifests

launchUlyssesRemoteWithBitBucketDC()

Launch Ulysses Remote using Bitbucket Data Center

launchUlyssesRepo()

Function to Launch new Ulysses Repo

makeExecOptions()

Make ExecOptions for Ulysses

makeStudyMeta()

Make Study Meta for Ulysses

makeTaskFile()

Function initializing an R file for an analysis task

makeUlyssesStudySettings()

Make Ulysses Study Settings

populateManifest()

Initialize Manifests

setAtlasConnection()

Set Atlas Connection

setContributor()

Set Ulysses Contributor

setDbConfigBlock()

set the config block for a database

syncUlyssesWork()

Function to sync local work in Ulysses to remote

templateAtlasCredentials()

Template for setting Atlas Credentials

updateStudyVersion()

Function to update the study version

zipAndArchive()

Zip and Archive results from a study execution