Confidence interval calibration
Functions for calibrating confidence intervals based on a systematic error model fitted using negative and positive controls.

fitSystematicErrorModel()

Fit a systematic error model 
convertNullToErrorModel()

Convert empirical null distribution to systematic error model 
computeTraditionalCi()

Compute the (traditional) confidence interval 
calibrateConfidenceInterval()

Calibrate confidence intervals 
plotTrueAndObserved()

Plot true and observed values 
evaluateCiCalibration()

Evaluate confidence interval calibration 
plotCiCalibration()

Create a confidence interval calibration plot 
plotCiCalibrationEffect()

Plot true and observed values 
plotCiCoverage()

Create a confidence interval coverage plot 
plotErrorModel()

Plot the systematic error model 