Package index

Run all diagnostics

phenotypeDiagnostics()

Phenotype a cohort

Run individual diagnostics

databaseDiagnostics()

Database diagnostics

codelistDiagnostics()

Run codelist-level diagnostics

cohortDiagnostics()

Run cohort-level diagnostics

populationDiagnostics()

Population-level diagnostics

Visualise results

shinyDiagnostics()

Create a shiny app summarising your phenotyping results

Create expectations to compare results against

getCohortExpectations()

Get cohort expectations using an LLM

tableCohortExpectations()

Create a table summarising cohort expectations

Codelist diagnostics helper

addCodelistAttribute()

Adds the cohort_codelist attribute to a cohort

Mock data

mockPhenotypeR()

Function to create a mock cdm reference for mockPhenotypeR