Package index • PhenotypeR

Run all diagnostics

phenotypeDiagnostics(): Phenotype a cohort

Run individual diagnostics

codelistDiagnostics(): Run codelist-level diagnostics

cohortDiagnostics(): Run cohort-level diagnostics

databaseDiagnostics(): Database diagnostics

matchedDiagnostics(): Compare characteristics of cohort matched to database population

populationDiagnostics(): Population-level diagnostics

Visualise results

shinyDiagnostics(): Create a shiny app summarising your phenotyping results

Codelist diagnostics helper

addCodelistAttribute(): Adds the cohort_codelist attribute to a cohort