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Sequence ratio calculations

Source: R/summariseSequenceRatios.R
summariseSequenceRatios.Rd

Using generateSequenceCohortSet to obtain sequence ratios for the desired outcomes.

Usage

summariseSequenceRatios(cohort, cohortId = NULL, confidenceInterval = 95)

Arguments

cohort

A cohort table in the cdm.

cohortId

The Ids in the cohort that are to be included in the analyses.

confidenceInterval

Default is 95, indicating the central 95% confidence interval.

Value

A local table with all the analyses.

Examples

# \donttest{
library(CohortSymmetry)
cdm <- mockCohortSymmetry()
cdm <- generateSequenceCohortSet(cdm = cdm,
                                 name = "joined_cohorts",
                                 indexTable = "cohort_1",
                                 markerTable = "cohort_2")
pssa_result <- summariseSequenceRatios(cohort = cdm$joined_cohorts)
#> Warning: For at least some combinations, index is always before marker or marker always
#> before index
#> -- 5 combinations of 8 had index always before marker
#> -- 5 combinations of 8 had marker always before index
pssa_result
#> # A tibble: 80 × 13
#>    result_id cdm_name      group_name       group_level strata_name strata_level
#>        <int> <chr>         <chr>            <chr>       <chr>       <chr>       
#>  1         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  2         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  3         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  4         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  5         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  6         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  7         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  8         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#>  9         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#> 10         1 mock database index_cohort_na… cohort_1 &… overall     overall     
#> # ℹ 70 more rows
#> # ℹ 7 more variables: variable_name <chr>, variable_level <chr>,
#> #   estimate_name <chr>, estimate_type <chr>, estimate_value <chr>,
#> #   additional_name <chr>, additional_level <chr>
CDMConnector::cdmDisconnect(cdm)
# }