Package index

Generate sequence cohorts

Functions for generating sequence cohorts for sequence symmetry analysis.

generateSequenceCohortSet()

Intersecting the index and marker cohorts prior to calculating Sequence Symmetry Ratios

Sequence symmetry analysis

Functions for summarising, visualising, and tabulating sequence ratios.

summariseSequenceRatios()

Sequence ratio calculations

plotSequenceRatios()

A plot for the sequence ratios.

tableSequenceRatios()

A formatted visualization of sequence_symmetry objects.

Temporal symmetry analysis

Functions for summarising, visualising, and tabulating temporal symmetry.

summariseTemporalSymmetry()

Summarise temporal symmetry

plotTemporalSymmetry()

A plot for the temporal symmetry of cohorts.

tableTemporalSymmetry()

A formatted visualization of temporal_symmetry objects.

Mock data

Function for creating mock data for CohortSymmetry.

mockCohortSymmetry()

Creates mock cdm object for testing