A plot for the sequence ratios. — plotSequenceRatios • CohortSymmetry

It provides a ggplot of the sequence ratios of index and marker cohorts.

Usage

plotSequenceRatios(
  result,
  onlyASR = FALSE,
  plotTitle = NULL,
  labs = c("SR", "Drug Pairs"),
  colours = c("red", "blue"),
  facet = NULL
)

Arguments

result: Table output from summariseSequenceRatios.
onlyASR: If set to be TRUE then only adjusted SR will be plotted. Otherwise if it is set to be FALSE then both adjusted and crude SR will be plotted.
plotTitle: Title of the plot, if NULL no title will be included in the plot.
labs: Axis labels for the plot.
colours: Colours for sequence ratio.
facet: The variable to facet by.

Value

A plot for the sequence ratios of index and marker cohorts.

Examples

# \donttest{
library(CohortSymmetry)
cdm <- mockCohortSymmetry()
cdm <- generateSequenceCohortSet(cdm = cdm,
                                 indexTable = "cohort_1",
                                 markerTable = "cohort_2",
                                 name = "joined_cohort")
sequence_ratio <- summariseSequenceRatios(cohort = cdm$joined_cohort)
#> Warning: For at least some combinations, index is always before marker or marker always
#> before index
#> -- 5 combinations of 8 had index always before marker
#> -- 5 combinations of 8 had marker always before index
plotSequenceRatios(result = sequence_ratio)
#> Warning: Removed 3 rows containing missing values or values outside the scale range
#> (`geom_point()`).

CDMConnector::cdmDisconnect(cdm = cdm)
# }