CDM Table name: STEM
Reading from OPTUM_EHR.Medication_Administrations
| Destination Field | Source Field | Logic | Comment |
|---|---|---|---|
| id | autogenerate | ||
| domain_id | This should be the domain_id of the standard concept in the CONCEPT_ID field. If a source code is mapped to CONCEPT_ID 0, put the domain_id as Observation. | ||
| person_id | ptid | ||
| visit_occurrence_id | encid | Lookup the VISIT_OCCURRENCE_ID based on the encid | If encid is blank then use admin_date to determine which VISIT_OCCURRENCE_ID the diagnosis should be associated to |
| visit_detail_id | encid | Lookup the VISIT_DETAIL_ID based on the encid | If encid is blank then leave VISIT_DETAIL_ID blank |
| provider_id | provid | Lookup the PROVIDER_ID in the PROVIDER table using provid | If provid then leave PROVIDER_ID blank |
| start_date | admin_date | Use order_date if admin_date is empty or null. | |
| end_date | admin_date | Use order_date if admin_date is empty or null. | |
| start_datetime | admin_time | Combine admin_date and admin_time into a datetime | |
| end_datetime | admin_time | Combine admin_date and admin_time into a datetime | |
| concept_id | ndc | Use the SOURCE_TO_STANDARD query to map the code to standard concept(s) with the following filters: Where source_vocabulary_id = ‘NDC’ and Target_standard_concept = ‘S’ and target_invalid_reason is NULL and admin_date between valid_start_date and valid_end_date If there is no mapping available, set concept_id to zero. | |
| source_value | ndc | ||
| source_concept_id | ndc | Use the SOURCE_TO_SOURCE query to map the code to standard concept(s) with the following filters: Where source_vocabulary_id = ‘NDC’ If there is no mapping available, set concept_id to zero. | |
| type_concept_id | 32818 | EHR Administration record | |
| operator_concept_id | 0 | ||
| unit_concept_id | |||
| unit_source_value | |||
| range_high | |||
| range_low | |||
| value_as_number | |||
| value_as_string | |||
| value_as_concept_id | |||
| value_source_value | |||
| verbatim_end_date | |||
| days_supply | |||
| dose_unit_source_value | strength_unit | ||
| lot_number | |||
| modifier_concept_id | |||
| modifier_concept_id | |||
| modifier_source_value | |||
| quantity | quantity_of_dose | ||
| refills | |||
| route_concept_id | route | Use the SOURCE_TO_STANDARD query to map the code to standard concept(s) with the following filters: Where source_vocabulary_id = ‘JNJ_OPTUM_EHR_ROUTE’ and Target_standard_concept = ‘S’ and target_invalid_reason is NULL If there is no mapping available, set concept_id to zero. | |
| route_source_value | route | ||
| sig | |||
| stop_reason | discontinue_reason | ||
| unique_device_id | |||
| anatomic_site_concept_id | |||
| disease_status_concept_id | |||
| specimen_source_id | |||
| anatomic_site_source_value | |||
| disease_status_source_value | |||
| condition_status_concept_id | |||
| condition_status_source_value |
Change Log
March 12, 2024
- start/end date added use order_date if admin_date is epmty or null